Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00233 ATGCAGGATGGCATTGACGACACCTCGTCCGAGGAAGAGTTGACAGCCCAAGGTGCGAGGCCTGGGTGTCGTGTGACTAAGCAAATTGATCCTTATACTAAGCAAAGATCTCTTCTTTTTAAGTTTGATTATCCTGAGATTGAAGGCATCGCAAAGCCTAGGCATCGATTTATATCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCGAGCACAGAGCACGTCTGCTCTAAAGTTTTTCTCGCCGTCAATTTCCGGGTTGAGGGACTTCATCCAACCCAACGTGGTCAAAGGAATGGTTCTCTTGAACCAAAACGATGTTTTGATGGTTTAGCTATGAATAATGTTGGAATATGA 417 0.4341 MQDGIDDTSSEEELTAQGARPGCRVTKQIDPYTKQRSLLFKFDYPEIEGIAKPRHRFISSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEHVCSKVFLAVNFRVEGLHPTQRGQRNGSLEPKRCFDGLAMNNVGI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00233 138 PANTHER SPLICING FACTOR 3A SUBUNIT 2 16 94 - -
Trre16g00233 138 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g00233 138 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 20 95 IPR031781 -
Trre16g00233 138 Gene3D - 3 102 - -
Trre16g00233 138 SMART CactinC_cactus_3 10 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00233 Trre-Chr16 1659907 1664385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00233 15 93 C2H2 Transcription Factor Family AT2G32600 73.418 1.73e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00233 K12826 - mnt:21405395 133.65