Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00232 ATGGACGATCTAGGTGATGATTACGATGGCATTGACGACACCTCGTCCGAGGAAGAGTTGACAGCCCAAGGTGCGAGTATCAGGGGATATTTGGTTGATGAAGATGAATTTGACGACATGAAAAGACTATTCATAGACCTATGCTCAGCAGTGTTGTTAAATAACTGGCCTGGGTGTCGTGTGACTAAGCAAATTGATCCTTATACTAAGCAAAGATCTCTTCTTTTTAAGTTTGATTATCCTGAGATTGAAGGCATCGCAAAGCCTAGGCATCGATTTATATCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCGAGCACAGAGCACGTCTGCTCTAAAGTTTTTCTCGCCGTCAATTTCCGGGTTGAGGGACTTCATCCAACCCAACGTGGTCAAAGGAATGGTTCTCTTGAACCAAAACGATGTTTTGATGGTTTAGCTATGAATAATGTTGGAATATGA 525 0.419 MDDLGDDYDGIDDTSSEEELTAQGASIRGYLVDEDEFDDMKRLFIDLCSAVLLNNWPGCRVTKQIDPYTKQRSLLFKFDYPEIEGIAKPRHRFISSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEHVCSKVFLAVNFRVEGLHPTQRGQRNGSLEPKRCFDGLAMNNVGI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00232 174 PANTHER SPLICING FACTOR 3A SUBUNIT 2 57 130 - -
Trre16g00232 174 Gene3D - 51 138 - -
Trre16g00232 174 SMART CactinC_cactus_3 33 150 - -
Trre16g00232 174 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 57 131 IPR031781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00232 Trre-Chr16 1659907 1664667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00232 57 129 C2H2 Transcription Factor Family AT2G32600 76.712 8.50e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00232 K12826 - mnt:21405395 130.954