Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00231 ATGGACGATCTAGGTGATGATTACGATGGCATTGACGACACCTCGTCCGAGGAAGAGTTGACAGCCCAAGAGAAGCAAATTGCATATGATGCTCTTCGCATTTCAGTATCAGATTCTAGGGGATATTTGGTTGATGAAGATGAATTTGACGACATGAAAAGACTATTCATAGACCTATGCTCAGCAGTGTTGTTAAATAACTGGCCTGGGTGTCGTGTGACTAAGCAAATTGATCCTTATACTAAGCAAAGATCTCTTCTTTTTAAGTTTGATTATCCTGAGATTGAAGGCATCGCAAAGCCTAGGCATCGATTTATATCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCGAGCACAGAGCACGTCTGCTCTAAAGTTTTTCTCGCCGTCAATTTCCGGGTTGAGGGACTTCATCCAACCCAACGTGGTCAAAGGAATGGTTCTCTTGAACCAAAACGATGTTTTGATGGTTTAGCTATGAATAATGTTGGAATATGA 561 0.4118 MDDLGDDYDGIDDTSSEEELTAQEKQIAYDALRISVSDSRGYLVDEDEFDDMKRLFIDLCSAVLLNNWPGCRVTKQIDPYTKQRSLLFKFDYPEIEGIAKPRHRFISSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEHVCSKVFLAVNFRVEGLHPTQRGQRNGSLEPKRCFDGLAMNNVGI 186
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00231 186 PANTHER SPLICING FACTOR 3A SUBUNIT 2 69 142 - -
Trre16g00231 186 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 69 143 IPR031781 -
Trre16g00231 186 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g00231 186 MobiDBLite consensus disorder prediction 1 17 - -
Trre16g00231 186 Gene3D - 63 150 - -
Trre16g00231 186 SMART CactinC_cactus_3 45 162 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g00231 Trre-Chr16 1659907 1664667 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00231 69 141 C2H2 Transcription Factor Family AT2G32600 76.712 1.19e-33 119