Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00227 ATGGACAGAGAATGGGGTTCAAAACCGGGAAGCGGCGGAGCAGCGACGGCGCAAAACGAAGCAATAGACCGCCGTGAAAGACTCCGACGATTAGCATTAGAAACAATAGATCTAGCAAAAGATCCATATTTCATGCGAAATCATCTCGGTAGTTATGAATGCAAACTCTGTCTAACTCTTCATAACAACGAAGGTAACTACCTCGCTCATACACAAGGTAAACGCCATCAAACCAATCTCGCTAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCTACTCAACCTCAACCTCATAAGCGAAAACTTAATCTAAAGAAAACTGTTAAGATTGGAAGGCCTGGGTATCGTGTGACTAAGCAATTTGATCCTGATACTAAGCAAAGATCTCTTCTTTTTCAGATTGAATATCCTGAGATTGAAGACCTCGCAAAGCCTAGACATCGATTTATGTCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCAAGCACTGAGATTGATAAGTCCACTCCAAAGTTTTTCTCACACTGGGATCCAGATTCAAAGATGTTCACACTGCAGTTGTATTTTAAAACCAAACCGCCAGAGGCAACCAAACCGCAGCCGCCTACCTCTGCACCTAATGGCACCACCACAGCACCTGGTGTTCCACCAAGACCTATGCCCCCACCACCACAAGCTCCATTACCACCACCACCACCTCCTCCACAAGGGCTACCTCCTGGCGCACCGATGGGAAATCCTCCTCGAGCACCTCCACCTCCAATGTCAGGATCAATGCCGCCGCCACCTCCTATGGCTGCAAATGGTCCTCGACCTATACACTCTGGTGCAATGCCACCTCTCCCACCCCCAGCCCCCCTTGGTGCTAGACCTCCATCAATGCCACCTCCTCCACAAGGTTTTCCAGGCCAACAGATGCAGAGCTAG 990 0.4808 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKLNLKKTVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEATKPQPPTSAPNGTTTAPGVPPRPMPPPPQAPLPPPPPPPQGLPPGAPMGNPPRAPPPPMSGSMPPPPPMAANGPRPIHSGAMPPLPPPAPLGARPPSMPPPPQGFPGQQMQS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00227 329 SMART CactinC_cactus_3 89 217 - -
Trre16g00227 329 FunFam Splicing factor 3a subunit 2 94 218 - -
Trre16g00227 329 Gene3D - 93 218 - -
Trre16g00227 329 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Trre16g00227 329 Gene3D Classic Zinc Finger 46 89 - -
Trre16g00227 329 MobiDBLite consensus disorder prediction 233 323 - -
Trre16g00227 329 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Trre16g00227 329 Pfam Zinc-finger of C2H2 type 52 76 - -
Trre16g00227 329 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Trre16g00227 329 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g00227 329 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 328 - -
Trre16g00227 329 MobiDBLite consensus disorder prediction 213 329 - -
Trre16g00227 329 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00227 Trre-Chr16 1639502 1642781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00227 1 229 C2H2 Transcription Factor Family AT2G32600 85.590 6.48e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00227 K12826 - sspl:121792200 442.965