Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00224 ATGGACCCTCAACTTTCTAATAATAATGGTACAAACAATGAGGCTGAAGACCCCTTAGTTATGGAATTACCACCAGGTTACAAATTCATCCCTGATGATGTTGACTTAATTGATTATTATTTGAAGTATAAGTTAGCTGGTTTTTTCATAAATCCACCAAGAATTAAAGATATTGAAGTTTACAAATATTCTCCTCAAGAATTAGAAAAATACCATAAATTCAAAGGAGAGAAAGAAATGTATTTTTTTACTCGAAGAAGCAAGAAATATAAAGAGGGAAGTCGTCCAAATCGGGATGTTAAAAACCACGACGGTATTCATCTAGGTTTTTGGAAGGCTACTGGAAAAGAAAATTCAGTGATGAATAATGATATTGAAGTTGGATTTAAAAGAACTTTAGTCTATTACATAGGAAAGCAAGACAAACCTAAACAAGAAAAGTCTAATGAGTCAATAAAAACCAATTGGATCAGGCAAGAGTTTAGAATTAAAGATCTTACAAGTTCAAATGCAACTCCTCCTAATATGGTAAGCTAA 537 0.3184 MDPQLSNNNGTNNEAEDPLVMELPPGYKFIPDDVDLIDYYLKYKLAGFFINPPRIKDIEVYKYSPQELEKYHKFKGEKEMYFFTRRSKKYKEGSRPNRDVKNHDGIHLGFWKATGKENSVMNNDIEVGFKRTLVYYIGKQDKPKQEKSNESIKTNWIRQEFRIKDLTSSNATPPNMVS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00224 178 PANTHER NAC TRANSCRIPTION FACTOR 56 21 166 - -
Trre16g00224 178 Pfam No apical meristem (NAM) protein 24 163 IPR003441 GO:0003677|GO:0006355
Trre16g00224 178 Gene3D NAC domain 33 176 IPR036093 GO:0003677|GO:0006355
Trre16g00224 178 SUPERFAMILY NAC domain 19 168 IPR036093 GO:0003677|GO:0006355
Trre16g00224 178 ProSiteProfiles NAC domain profile. 23 178 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00224 Trre-Chr16 1625112 1626060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00224 20 169 NAC Transcription Factor Family AT1G01720 42.667 9.45e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00224 NAM 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00224 - - tpra:123886946 309.686