Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00223 ATGGACCCTCAACTTTCTAATAATAATGGTACAAACAATGAGGCTGAAGACCCCTTAGTTATGGAATTACCACCAGGTTACAAATTCATCCCTGATGATGTTGACTTAATTGATTATTATTTGAAGTATAAGTTAGCTGGTTTTTTCATAAATCCACCAAGAATTAAAGATATTGAAGTTTACAAATATTCTCCTCAAGAATTAGAAAAATACCATAAATTCAAAGGAGAGAAAGAAATGTATTTTTTTACTCGAAGAAGCAAGAAATATAAAGAGGGAAGTCGTCCAAATCGGGATGTTAAAAACCACGACGGTATTCATCTAGGTTTTTGGAAGGCTACTGGAAAAGAAAATTCAGTGATGAATAATGATATTGAAGTTGGATTTAAAAGAACTTTAGTCTATTACATAGGAAAGCAAGACAAACCTAAACAAGAAAAGTCTAATGAGTCAATAAAAACCAATTGGATCAGGCAAGAGTTTAGAATTAAAGATCTTACAAGTTCAAATGCAACTCCTCCTAATATGGATGATTGGGTTTTATGCAAAATTTATGAGCATCAATATGGAATGAAGAAATCTCAAATGGAAGGTCAAAACAACAAACAAGTGACAATAACTGTTGCTCCACAATGCCAACAACTCAATCAATATCATCAAACTCAATGCATGCAATCTTCCTTGTCACCAAATATGGTTGATAACTCACAATTTCAATTCAATCAATATTCTCAAGTTCAAAAAATGCAAGATGATTCGGCAAAATACATAGCGGTTTCGTGTCAACCTAATCAATGTTCAGAGTCGCAATCAAATGAAGTTTCCTCATCATCAAACATGATTTGTATTACACAATGTCAACCCAATCAACATGATGATGCTCAACAAGTCCAAGCTTCATCATCAACCATGGTTGTCGCGCGGCAATATCATTCCAATCAATATTCTCAGGCTCAACCAAATCAAGGTTGTTTATTAGCAGATTACGATTCACAATATCCACCCAACCAACATTTTCAAGATCAACAAACACATGGTTTTTTATCAACAAACGAGGTCTATGATTCACAATATTTACGTAATCAACGTTCTCAGGATCAACAAATGCAAGATTCTCAAATGGAAGACGATTACATATGGCAGTTAATAAACTTAGATGATAAAGATTCAAATGTTAATTATTTTGAAGAAGCTTAA 1197 0.3317 MDPQLSNNNGTNNEAEDPLVMELPPGYKFIPDDVDLIDYYLKYKLAGFFINPPRIKDIEVYKYSPQELEKYHKFKGEKEMYFFTRRSKKYKEGSRPNRDVKNHDGIHLGFWKATGKENSVMNNDIEVGFKRTLVYYIGKQDKPKQEKSNESIKTNWIRQEFRIKDLTSSNATPPNMDDWVLCKIYEHQYGMKKSQMEGQNNKQVTITVAPQCQQLNQYHQTQCMQSSLSPNMVDNSQFQFNQYSQVQKMQDDSAKYIAVSCQPNQCSESQSNEVSSSSNMICITQCQPNQHDDAQQVQASSSTMVVARQYHSNQYSQAQPNQGCLLADYDSQYPPNQHFQDQQTHGFLSTNEVYDSQYLRNQRSQDQQMQDSQMEDDYIWQLINLDDKDSNVNYFEEA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00223 398 PANTHER NAC TRANSCRIPTION FACTOR 56 21 263 - -
Trre16g00223 398 Pfam No apical meristem (NAM) protein 24 163 IPR003441 GO:0003677|GO:0006355
Trre16g00223 398 SUPERFAMILY NAC domain 19 185 IPR036093 GO:0003677|GO:0006355
Trre16g00223 398 Gene3D NAC domain 33 190 IPR036093 GO:0003677|GO:0006355
Trre16g00223 398 ProSiteProfiles NAC domain profile. 23 187 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00223 Trre-Chr16 1623487 1626060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00223 17 193 NAC Transcription Factor Family AT3G15500 41.011 2.18e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00223 NAM 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00223 - - tpra:123886946 482.641