Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00204 ATGAATCTTCATGATTTTAACATCATTTTTCATTTGGCTATGACAGAACTAGCAAGTCATTCTTGGACTACATGGCAGCCATTAGTCTCACCATGCTTCTTGGAACATATAACTTTACCTCTAGAATTTGGTTTCCTTGTGATATTGTTAGTTCAACTCATAAGAAATTGCATGAACAACATCACCAAGCAAAACAAGGCTTCAGATATACATCCAAATGGCATGAAATATGGTTTTGCTTACAAAATCAGCTTAATTTGCACTACTTTATTGTTTTCTATTCATGCCTTAATTCTAATATTGATGTTCAATCATGAGCCTCAATGTACATCAAAACTTCAAGCTTATACATCAGAGATAATTCAAGTGTTATCATGTGCTATTATTCTAATAGCAATATGTAAAATGTCAAAAAAACCAAATGCTCATTTCCCTTGGATTCTAAGAGCTTGGTGGTTTTTCAGTTTCCTTTTGAGTATTATCAGCACTACCCTTCATGTTCATTTCAGTGTAAAAAACAAGGGTATTGTTGGTATAAGAGAATATGCAGAATTCCTTGGTTTGGTTTCTTCAACATGTCTTTTAGTAATTTCAACAAGAGGTAAAACAGGCATAGTCATGATTGCAAGAAATGGTAGTAGTATATCTGAACCACTTTTGGAAGAGAAAAATGAGAAACATTCTTCTGAGTTTTTAAGAGAATCATCACCATATGGAAAAGCTACACTTCTCCAATTGATAACTTTCTCATGGCTCAATCCATTGTTTGCAGTAGGGTATAAGAAACCTATTCAATTGGATGATATTCCTGATGTCGACGTCAAGGACTCGGCTGAATATCTAAATTTCTCTTTTGATGATAGTATTAGACAAGTTAAGGAGAAAGATGGAACTACAAATCCATCTATCTACAAGGCAATTTATTTATTTGCTAGGAAGAAAGCGGCAATCAACGCATTTTTCGCGATAATAAATGCTTCGGCGTCTTATGTTGGTCCGTATTTGATCACTGACTTTGTGAATTTCCTAACCGAGAAGGAAAGCCGCGGAGTAAAGAGTGGATACCTTTTGTCATTAGGCTTCTTATGTGCTAAAATGGTTGAGACCATAGCTCAAAGGCAATGGATTTTTGGTGCTCGGCAATTAGGTCTCCGCCTTAGAGCAGCATTGATATCTCATATATATAAGAAGGGCTTACATTTGTCTAGCCGATCGCGTCAAAGTCATTCCGGTGGTGAGATAATGAATTACATGAGTGTAGATGTGCAGAGAATTACGGATTTCGTTTGGTATGTAAACACAATATGGATGCTGCCGATACAAATTTCGTTAGCTGTTTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCAACGCTAGCGGTTATGACTTTGAACATACCCTTAACAAAAATACAGAAAAGATACCAAACCAAGATCATGGATGCAAAAGACAACAGAATGAAAGCAACATCAGAAATTCTTAAAAACATGAGGACTTTGAAACTTCAATCATGGGATAGTGAATTTTTCAAAAGGATAGAATCATTGAGAAGTGTTGAATATGGTTGGTTATTGAAGTCATTAAGACAAGCGGCATTTTCCGCTTTTATCTTCTGGGGTTCACCTACATTCATTTCAGTGATAACCTTTTGGACGTGCATGTTCTTAGGGATTGAACTGACAGCTGGAAGGGTCTTATCAGCATTCGCGACATTTCGAATGTTACAAGATCCTATCTTTAGTCTACCTGATTTACTCAATGTCATGGCTCAAGGAAAAGTTTCAGTCGATAGGATCGCTTCTTTCCTTAAGAAAGAAGAAATCCAACACGACGTGATTGAATATGTTCCTAAGGACAAAACAGAATTTGATGTAGTTATTGAAAGAGGAAGATTCAGTTGGGATCCTGAGACAACAATTCCAACACTTGACGAAATTGAGTTGAAAGTTAAGAGAGGAATGAAGGTTGCAATTTGCGGTTCGGTTGGTTCTGGAAAAACTAGTATACTATCAGGAGTTTTAGGAGAGATATATAAACAATCAGGGAATGTTAAGATTAGTGGAACAAAGGCTTATGTTCCACAATCTGCATGGATACTTACTGGAAATATAAGGGATAATATAACTTTTGGAAAAGAGTTTGATGAGGATAAGTATGAGAAAACTGTTGAAGCATGTGCATTGAAAAAGGACTTTGAGTTATTCTCAGGTGGTGATTTGACTGAGATTGGTGAAAGAGGGATTAATATGAGTGGTGGACAGAAACAAAGGATACAGATAGCTAGAGCTGTTTATCAAGATGCTGACATTTACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCATACCGGCACTCACCTATTTAAGGAATGTCTTATGGGGATTCTCAAAGAGAAAACTATACTATTTGTTACCCACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCCGGAACATTTGAAGAACTTCTAAAGCAAAATATAGGGTTTGAATTATTAGTTGGTGCTCATAGCAAAGCACTAGAGTCAGTTCTTATGGTTGGAAATTCAAGTAAAACAAATTTAAATCCAATACCTGAAGGAGAATGCATCACCTATTCACACTCAAGTTCTGAACTTTTGCACACACAGCTTGACAAAGTGCAAGATAATTCTACAGATAGCAAAGGAAACAATGATGGAAAATTGGTTCAAGAAGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTATTGGTCTTATTTGACAACTGTTAAAGGTGGACTTCTTGTACCAATCATAATATTGGCACAGTCTTCATTCCAAATCCTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAAATCTGATGCTAAGCCAATATTTGATATGAATTTCATATTACTTATTTATATGGCACTTTCTGTTGCTGGTTCCTTTTGTGTTCTTCTGAGAGCCATGTTAGTGTTAAATTGTGGACTTTGGACAGCACAAACCTTTTTCACAAGAATGTTGCATAATGTCCAAAGAGCCCCCATGTCATTTTTTGATTCAACTCCAACTGGAAGAATCTTGAATAGGGCCTCCACAGATCAAAGTGTATTAGACATGGAAATTGCAAACAAAATAGGATGGTGTGCTTTCTCGGTAATACAGATTCTCGGAACTATTGCAGTGATGTGTCAGGCGGCGTGGCAAGTATTTATCATCTTCATTCCAGTAACTGGAATCTGCATATGGTATCAACGATATTATAATCCAACAGCAAGAGAACTGGCTCGGTTAGCACAGATACAAATTACTCCAATTCTCCATCATTTTTCAGAATCTTTAGCAGGAGCTGCATCAATACGAGCTTTCGATCAAGAACGCCGTTTCATGAGCACAAATCTTGTCCTTTTGGATGGCTTCTCAAGACCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACTTACTTTCAAATTTTGTTTTTGCCTTTTCACTTGTCTTGCTAGTGAGCCTCCCTGAAGGTTTCATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTAAATGTTTTGCAAGCTTCGGTTATATGGAACATTTGTAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGCAAGTGAATCACCTCTTGTGATCGAAGACTGTCGGCCGCCAAGAAACTGGCCCGAAACTGGAACAATATGTTTCCAAAATTTGCAGATACGTTATGCTGAGCATCTCCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGGAAGAAAATCGGTGTTGTAGGACGAACTGGAAGTGGAAAATCGACTCTCATACAAGCCATTTTCAGGATGGTTGAACCAAGAGAGGGATGCATTATAATTGACAATGTGGACATATGTGAGATAGGTCTACATGACTTAAGGTCAAGGCTCAGCATTATCCCACAGGATCCAGCCTTGTTTGAAGGCACAGTTAGAGGAAATCTGGATCCTCTGGAGCAATACTCTGACAGAGAAGTGTGGGAGGCTCTGGATAAATGTCAGCTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGACTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGCTGGACAAAGGCAGTTATTTTGCCTCGGAAGAGCATTGCTGAAGAAAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGACGGGGTGATCCAGGATATCATCTGTCAAGAGTTCAACAACCGAACAGTTGTCACAGTAGCTCATCGAATCCACACAGTTATTGATAGCGACTTGGTTTTGGTTCTCAGTGATGGGAGAATTGCAGAATATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTACAAACTTATAAAGGAGTACTCTAGCAGATCCCATAGCTTCAACAACTTGGCATCTCAACATGTCCATGGATAA 4548 0.3802 MNLHDFNIIFHLAMTELASHSWTTWQPLVSPCFLEHITLPLEFGFLVILLVQLIRNCMNNITKQNKASDIHPNGMKYGFAYKISLICTTLLFSIHALILILMFNHEPQCTSKLQAYTSEIIQVLSCAIILIAICKMSKKPNAHFPWILRAWWFFSFLLSIISTTLHVHFSVKNKGIVGIREYAEFLGLVSSTCLLVISTRGKTGIVMIARNGSSISEPLLEEKNEKHSSEFLRESSPYGKATLLQLITFSWLNPLFAVGYKKPIQLDDIPDVDVKDSAEYLNFSFDDSIRQVKEKDGTTNPSIYKAIYLFARKKAAINAFFAIINASASYVGPYLITDFVNFLTEKESRGVKSGYLLSLGFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYKKGLHLSSRSRQSHSGGEIMNYMSVDVQRITDFVWYVNTIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEILKNMRTLKLQSWDSEFFKRIESLRSVEYGWLLKSLRQAAFSAFIFWGSPTFISVITFWTCMFLGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASFLKKEEIQHDVIEYVPKDKTEFDVVIERGRFSWDPETTIPTLDEIELKVKRGMKVAICGSVGSGKTSILSGVLGEIYKQSGNVKISGTKAYVPQSAWILTGNIRDNITFGKEFDEDKYEKTVEACALKKDFELFSGGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIAQAGTFEELLKQNIGFELLVGAHSKALESVLMVGNSSKTNLNPIPEGECITYSHSSSELLHTQLDKVQDNSTDSKGNNDGKLVQEEERETGSISKEVYWSYLTTVKGGLLVPIIILAQSSFQILQIASNYWMAWVCPTKSDAKPIFDMNFILLIYMALSVAGSFCVLLRAMLVLNCGLWTAQTFFTRMLHNVQRAPMSFFDSTPTGRILNRASTDQSVLDMEIANKIGWCAFSVIQILGTIAVMCQAAWQVFIIFIPVTGICIWYQRYYNPTARELARLAQIQITPILHHFSESLAGAASIRAFDQERRFMSTNLVLLDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGFINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASESPLVIEDCRPPRNWPETGTICFQNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRMVEPREGCIIIDNVDICEIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDREVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQDIICQEFNNRTVVTVAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSHSFNNLASQHVHG 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00204 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 945 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00204 1515 SMART AAA_5 658 831 IPR003593 GO:0016887
Trre16g00204 1515 SMART AAA_5 1288 1480 IPR003593 GO:0016887
Trre16g00204 1515 SUPERFAMILY ABC transporter transmembrane region 931 1244 IPR036640 GO:0005524|GO:0016020
Trre16g00204 1515 CDD ABCC_MRP_domain1 631 831 - -
Trre16g00204 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1254 1494 IPR027417 -
Trre16g00204 1515 CDD ABC_6TM_ABCC_D1 317 605 IPR044746 GO:0140359
Trre16g00204 1515 CDD ABCC_MRP_domain2 1260 1480 - -
Trre16g00204 1515 FunFam ABC transporter C family member 3 1245 1497 - -
Trre16g00204 1515 FunFam ABC transporter C family member 5 906 1243 - -
Trre16g00204 1515 Gene3D ABC transporter type 1, transmembrane domain 906 1243 IPR036640 GO:0005524|GO:0016020
Trre16g00204 1515 Gene3D ABC transporter type 1, transmembrane domain 287 614 IPR036640 GO:0005524|GO:0016020
Trre16g00204 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 240 1500 - -
Trre16g00204 1515 Pfam ABC transporter 649 783 IPR003439 GO:0005524
Trre16g00204 1515 Gene3D - 1245 1498 IPR027417 -
Trre16g00204 1515 Gene3D - 626 857 IPR027417 -
Trre16g00204 1515 MobiDBLite consensus disorder prediction 899 920 - -
Trre16g00204 1515 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524|GO:0016887
Trre16g00204 1515 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Trre16g00204 1515 SUPERFAMILY ABC transporter transmembrane region 312 613 IPR036640 GO:0005524|GO:0016020
Trre16g00204 1515 Pfam ABC transporter transmembrane region 954 1189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00204 1515 Pfam ABC transporter transmembrane region 317 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00204 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00204 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Trre16g00204 1515 FunFam ABC transporter C family member 10 299 613 - -
Trre16g00204 1515 CDD ABC_6TM_ABCC_D2 943 1237 IPR044726 GO:0140359
Trre16g00204 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 846 IPR027417 -
Trre16g00204 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 854 IPR003439 GO:0005524
Trre16g00204 1515 FunFam ABC transporter C family member 5 616 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00204 Trre-Chr16 1498427 1504339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00204 638 875 Calmodulin-binding Proteins AT2G36910 29.961 4.63e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00204 - - gmx:100817486 2477.59