Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00203 ATGACTTTGGAGAACTTCTACAACATATTATCTAGTGCAACAAAACTAGCAAGTCATTCTTGGACTACATGGCAGCCATTAGTCTCACCATGCTTCTTGGAACATATAACTTTACCTCTAGAATTTGGTTTCCTTGTGATATTGTTAGTTCAACTCATAAGAAATTGCATGAACAACATCACCAAGCAAAACAAGGCTTCAGATATACATCCAAATGGCATGAAATATGGTTTTGCTTACAAAATCAGCTTAATTTGCACTACTTTATTGTTTTCTATTCATGCCTTAATTCTAATATTGATGTTCAATCATGAGCCTCAATGTACATCAAAACTTCAAGCTTATACATCAGAGATAATTCAAGTGTTATCATGTGCTATTATTCTAATAGCAATATGTAAAATGTCAAAAAAACCAAATGCTCATTTCCCTTGGATTCTAAGAGCTTGGTGGTTTTTCAGTTTCCTTTTGAGTATTATCAGCACTACCCTTCATGTTCATTTCAGTGTAAAAAACAAGGGTATTGTTGGTATAAGAGAATATGCAGAATTCCTTGGTTTGGTTTCTTCAACATGTCTTTTAGTAATTTCAACAAGAGGTAAAACAGGCATAGTCATGATTGCAAGAAATGGTAGTAGTATATCTGAACCACTTTTGGAAGAGAAAAATGAGAAACATTCTTCTGAGTTTTTAAGAGAATCATCACCATATGGAAAAGCTACACTTCTCCAATTGATAACTTTCTCATGGCTCAATCCATTGTTTGCAGTAGGGTATAAGAAACCTATTCAATTGGATGATATTCCTGATGTCGACGTCAAGGACTCGGCTGAATATCTAAATTTCTCTTTTGATGATAGTATTAGACAAGTTAAGGAGAAAGATGGAACTACAAATCCATCTATCTACAAGGCAATTTATTTATTTGCTAGGAAGAAAGCGGCAATCAACGCATTTTTCGCGATAATAAATGCTTCGGCGTCTTATGTTGGTCCGTATTTGATCACTGACTTTGTGAATTTCCTAACCGAGAAGGAAAGCCGCGGAGTAAAGAGTGGATACCTTTTGTCATTAGGCTTCTTATGTGCTAAAATGGTTGAGACCATAGCTCAAAGGCAATGGATTTTTGGTGCTCGGCAATTAGGTCTCCGCCTTAGAGCAGCATTGATATCTCATATATATAAGAAGGGCTTACATTTGTCTAGCCGATCGCGTCAAAGTCATTCCGGTGGTGAGATAATGAATTACATGAGTGTAGATGTGCAGAGAATTACGGATTTCGTTTGGTATGTAAACACAATATGGATGCTGCCGATACAAATTTCGTTAGCTGTTTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCAACGCTAGCGGTTATGACTTTGAACATACCCTTAACAAAAATACAGAAAAGATACCAAACCAAGATCATGGATGCAAAAGACAACAGAATGAAAGCAACATCAGAAATTCTTAAAAACATGAGGACTTTGAAACTTCAATCATGGGATAGTGAATTTTTCAAAAGGATAGAATCATTGAGAAGTGTTGAATATGGTTGGTTATTGAAGTCATTAAGACAAGCGGCATTTTCCGCTTTTATCTTCTGGGGTTCACCTACATTCATTTCAGTGATAACCTTTTGGACGTGCATGTTCTTAGGGATTGAACTGACAGCTGGAAGGGTCTTATCAGCATTCGCGACATTTCGAATGTTACAAGATCCTATCTTTAGTCTACCTGATTTACTCAATGTCATGGCTCAAGGAAAAGTTTCAGTCGATAGGATCGCTTCTTTCCTTAAGAAAGAAGAAATCCAACACGACGTGATTGAATATGTTCCTAAGGACAAAACAGAATTTGATGTAGTTATTGAAAGAGGAAGATTCAGTTGGGATCCTGAGACAACAATTCCAACACTTGACGAAATTGAGTTGAAAGTTAAGAGAGGAATGAAGGTTGCAATTTGCGGTTCGGTTGGTTCTGGAAAAACTAGTATACTATCAGGAGTTTTAGGAGAGATATATAAACAATCAGGGAATGTTAAGATTAGTGGAACAAAGGCTTATGTTCCACAATCTGCATGGATACTTACTGGAAATATAAGGGATAATATAACTTTTGGAAAAGAGTTTGATGAGGATAAGTATGAGAAAACTGTTGAAGCATGTGCATTGAAAAAGGACTTTGAGTTATTCTCAGGTGGTGATTTGACTGAGATTGGTGAAAGAGGGATTAATATGAGTGGTGGACAGAAACAAAGGATACAGATAGCTAGAGCTGTTTATCAAGATGCTGACATTTACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCATACCGGCACTCACCTATTTAAGGAATGTCTTATGGGGATTCTCAAAGAGAAAACTATACTATTTGTTACCCACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCCGGAACATTTGAAGAACTTCTAAAGCAAAATATAGGGTTTGAATTATTAGTTGGTGCTCATAGCAAAGCACTAGAGTCAGTTCTTATGGTTGGAAATTCAAGTAAAACAAATTTAAATCCAATACCTGAAGGAGAATGCATCACCTATTCACACTCAAGTTCTGAACTTTTGCACACACAGCTTGACAAAGTGCAAGATAATTCTACAGATAGCAAAGGAAACAATGATGGAAAATTGGTTCAAGAAGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTATTGGTCTTATTTGACAACTGTTAAAGGTGGACTTCTTGTACCAATCATAATATTGGCACAGTCTTCATTCCAAATCCTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAAATCTGATGCTAAGCCAATATTTGATATGAATTTCATATTACTTATTTATATGGCACTTTCTGTTGCTGGTTCCTTTTGTGTTCTTCTGAGAGCCATGTTAGTGTTAAATTGTGGACTTTGGACAGCACAAACCTTTTTCACAAGAATGTTGCATAATGTCCAAAGAGCCCCCATGTCATTTTTTGATTCAACTCCAACTGGAAGAATCTTGAATAGGGCCTCCACAGATCAAAGTGTATTAGACATGGAAATTGCAAACAAAATAGGATGGTGTGCTTTCTCGGTAATACAGATTCTCGGAACTATTGCAGTGATGTGTCAGGCGGCGTGGCAAGTATTTATCATCTTCATTCCAGTAACTGGAATCTGCATATGGTATCAACGATATTATAATCCAACAGCAAGAGAACTGGCTCGGTTAGCACAGATACAAATTACTCCAATTCTCCATCATTTTTCAGAATCTTTAGCAGGAGCTGCATCAATACGAGCTTTCGATCAAGAACGCCGTTTCATGAGCACAAATCTTGTCCTTTTGGATGGCTTCTCAAGACCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACTTACTTTCAAATTTTGTTTTTGCCTTTTCACTTGTCTTGCTAGTGAGCCTCCCTGAAGGTTTCATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTAAATGTTTTGCAAGCTTCGGTTATATGGAACATTTGTAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGCAAGTGAATCACCTCTTGTGATCGAAGACTGTCGGCCGCCAAGAAACTGGCCCGAAACTGGAACAATATGTTTCCAAAATTTGCAGATACGTTATGCTGAGCATCTCCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGGAAGAAAATCGGTGTTGTAGGACGAACTGGAAGTGGAAAATCGACTCTCATACAAGCCATTTTCAGGATGGTTGAACCAAGAGAGGGATGCATTATAATTGACAATGTGGACATATGTGAGATAGGTCTACATGACTTAAGGTCAAGGCTCAGCATTATCCCACAGGATCCAGCCTTGTTTGAAGGCACAGTTAGAGGAAATCTGGATCCTCTGGAGCAATACTCTGACAGAGAAGTGTGGGAGGCTCTGGATAAATGTCAGCTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGACTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGCTGGACAAAGGCAGTTATTTTGCCTCGGAAGAGCATTGCTGAAGAAAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGACGGGGTGATCCAGGATATCATCTGTCAAGAGTTCAACAACCGAACAGTTGTCACAGTAGCTCATCGAATCCACACAGTTATTGATAGCGACTTGGTTTTGGTTCTCAGTGATGGGAGAATTGCAGAATATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTACAAACTTATAAAGGAGTACTCTAGCAGATCCCATAGCTTCAACAACTTGGCATCTCAACATGTCCATGGATAA 4545 0.3806 MTLENFYNILSSATKLASHSWTTWQPLVSPCFLEHITLPLEFGFLVILLVQLIRNCMNNITKQNKASDIHPNGMKYGFAYKISLICTTLLFSIHALILILMFNHEPQCTSKLQAYTSEIIQVLSCAIILIAICKMSKKPNAHFPWILRAWWFFSFLLSIISTTLHVHFSVKNKGIVGIREYAEFLGLVSSTCLLVISTRGKTGIVMIARNGSSISEPLLEEKNEKHSSEFLRESSPYGKATLLQLITFSWLNPLFAVGYKKPIQLDDIPDVDVKDSAEYLNFSFDDSIRQVKEKDGTTNPSIYKAIYLFARKKAAINAFFAIINASASYVGPYLITDFVNFLTEKESRGVKSGYLLSLGFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYKKGLHLSSRSRQSHSGGEIMNYMSVDVQRITDFVWYVNTIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEILKNMRTLKLQSWDSEFFKRIESLRSVEYGWLLKSLRQAAFSAFIFWGSPTFISVITFWTCMFLGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASFLKKEEIQHDVIEYVPKDKTEFDVVIERGRFSWDPETTIPTLDEIELKVKRGMKVAICGSVGSGKTSILSGVLGEIYKQSGNVKISGTKAYVPQSAWILTGNIRDNITFGKEFDEDKYEKTVEACALKKDFELFSGGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIAQAGTFEELLKQNIGFELLVGAHSKALESVLMVGNSSKTNLNPIPEGECITYSHSSSELLHTQLDKVQDNSTDSKGNNDGKLVQEEERETGSISKEVYWSYLTTVKGGLLVPIIILAQSSFQILQIASNYWMAWVCPTKSDAKPIFDMNFILLIYMALSVAGSFCVLLRAMLVLNCGLWTAQTFFTRMLHNVQRAPMSFFDSTPTGRILNRASTDQSVLDMEIANKIGWCAFSVIQILGTIAVMCQAAWQVFIIFIPVTGICIWYQRYYNPTARELARLAQIQITPILHHFSESLAGAASIRAFDQERRFMSTNLVLLDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGFINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASESPLVIEDCRPPRNWPETGTICFQNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRMVEPREGCIIIDNVDICEIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDREVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQDIICQEFNNRTVVTVAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSHSFNNLASQHVHG 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00203 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 853 IPR003439 GO:0005524
Trre16g00203 1514 FunFam ABC transporter C family member 3 1244 1496 - -
Trre16g00203 1514 FunFam ABC transporter C family member 10 298 612 - -
Trre16g00203 1514 FunFam ABC transporter C family member 5 905 1242 - -
Trre16g00203 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 845 IPR027417 -
Trre16g00203 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1495 IPR003439 GO:0005524
Trre16g00203 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00203 1514 Gene3D - 625 856 IPR027417 -
Trre16g00203 1514 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Trre16g00203 1514 FunFam ABC transporter C family member 5 615 862 - -
Trre16g00203 1514 SUPERFAMILY ABC transporter transmembrane region 930 1243 IPR036640 GO:0005524|GO:0016020
Trre16g00203 1514 Gene3D - 1244 1497 IPR027417 -
Trre16g00203 1514 Pfam ABC transporter 1278 1426 IPR003439 GO:0005524
Trre16g00203 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1224 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00203 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1499 - -
Trre16g00203 1514 Pfam ABC transporter transmembrane region 316 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00203 1514 Pfam ABC transporter transmembrane region 953 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00203 1514 SUPERFAMILY ABC transporter transmembrane region 311 612 IPR036640 GO:0005524|GO:0016020
Trre16g00203 1514 CDD ABCC_MRP_domain1 630 830 - -
Trre16g00203 1514 MobiDBLite consensus disorder prediction 898 919 - -
Trre16g00203 1514 Gene3D ABC transporter type 1, transmembrane domain 286 613 IPR036640 GO:0005524|GO:0016020
Trre16g00203 1514 Gene3D ABC transporter type 1, transmembrane domain 905 1242 IPR036640 GO:0005524|GO:0016020
Trre16g00203 1514 CDD ABC_6TM_ABCC_D2 942 1236 IPR044726 GO:0140359
Trre16g00203 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1253 1493 IPR027417 -
Trre16g00203 1514 CDD ABC_6TM_ABCC_D1 316 604 IPR044746 GO:0140359
Trre16g00203 1514 CDD ABCC_MRP_domain2 1259 1479 - -
Trre16g00203 1514 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524|GO:0016887
Trre16g00203 1514 SMART AAA_5 657 830 IPR003593 GO:0016887
Trre16g00203 1514 SMART AAA_5 1287 1479 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00203 Trre-Chr16 1492670 1504339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00203 637 874 Calmodulin-binding Proteins AT2G36910 29.961 4.95e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00203 - - gmx:100817486 2484.14