Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00169 ATGGATACAGATACAGTTACACCACCGTCACCGTCATCGTTACAAAACATAAGTCCCAGCATTCTCATCATTGTTATAGTTCTCGCCGTCACCGTCATAGTTTCCTTCGCAATCTGTTTCCTTCTCCGTCACCTCAACCGTAACTGTCTCCGCCGTCTCATCGCCGATCCATCACCAACAACAACCATAACCGTCGAATCATCACCTCACAGCAACCGAATCTCGCCGGAGATCATACCTCCTTCAGTTATAGATTCACTTCCTCTCTTCACATACTCCTCCATTTCTCGCCGTTCCTCCGCCGTCACCGCCGCCGACTGTGCTGTATGCCTCTCGAAGTTCCGTAGCAACGACCTCCTCCGTTCTCTTCCTCTCTGTTGTCACGCATTCCACGCCGAATGTATCGACACTTGGCTCCGTTCGAATCTCTCATGTCCTCTCTGTCGTTCCTCCATTTTCCCTTCCGATTCCGACCTCGCCAAAATTCTCCGATCAACTTCCTCAGACAGTTTCCGAGTCGAAATCGGAAACGTAAGCCGGCGAGGAACAAATTCAACCAATCCAGAACTCGCCGGTGGAGGTGACTCAAGGTCCTATTCTATTGGATCATTCGATTATTATGTGGTTGAACCATCGGAAGTTCCGTTCAGTCAAGATCACCGGAGAAGCATTTCCGATCAGAAGGAAATCCACATTCCGATTTCAGAGGATTCTTCTGTTGTTACTGTCGCCGGTGAAGTTTCCAGCAGTGGACATTGGTTGAAGGATTACGTGGACAGGCTTTCGGCTACGATTTCATCGAGAACGGCGTCGTTTCGAAGCTCAGGAAGATTCTTCGGTGGTGGCGGAAGTAGTCGGAGAATCGAGCCGGTTGACTATGATGTTGAAGGTGATAGAATTGGTGAAGAAATTAGTGAGATGTTTCGATGGCTTTCAGGGGTATGA 945 0.4899 MDTDTVTPPSPSSLQNISPSILIIVIVLAVTVIVSFAICFLLRHLNRNCLRRLIADPSPTTTITVESSPHSNRISPEIIPPSVIDSLPLFTYSSISRRSSAVTAADCAVCLSKFRSNDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFPSDSDLAKILRSTSSDSFRVEIGNVSRRGTNSTNPELAGGGDSRSYSIGSFDYYVVEPSEVPFSQDHRRSISDQKEIHIPISEDSSVVTVAGEVSSSGHWLKDYVDRLSATISSRTASFRSSGRFFGGGGSSRRIEPVDYDVEGDRIGEEISEMFRWLSGV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00169 314 CDD RING-H2_EL5-like 106 149 - -
Trre16g00169 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 218 - -
Trre16g00169 314 SMART ring_2 107 148 IPR001841 -
Trre16g00169 314 SUPERFAMILY RING/U-box 83 155 - -
Trre16g00169 314 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre16g00169 314 Pfam Ring finger domain 106 149 IPR001841 -
Trre16g00169 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Trre16g00169 314 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00169 Trre-Chr16 1201135 1202079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00169 70 162 C3H Transcription Factor Family AT3G18930 47.000 2.14e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00169 K10663 - gmx:100776516 324.324