Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00165 ATGGAAGATTTGTGGGAAAAGTGGATTTCTTCTTTGGAAATGGGTGGTGACAAATCTCTCTCTTTGGATGAAGACAAGTTTCTCATCGAGAATATTCAACAAAGTTTCCCTTTTGAGAATGCTGATAATTCTCAAACTTCAACCATACAATATTGTAATAATATTGTTGATAATGTTTGTGTCACCACCACAATTCATGATGAGAAAATGCTCAATAATAGTAATAGTTCCAACTCTCTCATTTCTCAAGAATATTATGATGCTACTAATTCACAACAATTAGCACCTTCTCAATTCATTTTGTCTTTTGAAAACACAACTGTGGAACCTTCTCCTAATAGTGCCACATTTTCTACTATCATGGAACAAAAAACATCATTGGATAACAATGTGAGTGAATTACCAAAGGTAAAACAAAGAACCAAGAATCCTAGAAGCTCTTCTGAGGTACAAGAACATATCATAGCTGAAAGAAAAAGGAGACAAGTTATTAGTGAGAGGTTCATAGCACTTTCTGCCATCATACCTGGATTGAAGAAGGTTAGTTAA 549 0.3406 MEDLWEKWISSLEMGGDKSLSLDEDKFLIENIQQSFPFENADNSQTSTIQYCNNIVDNVCVTTTIHDEKMLNNSNSSNSLISQEYYDATNSQQLAPSQFILSFENTTVEPSPNSATFSTIMEQKTSLDNNVSELPKVKQRTKNPRSSSEVQEHIIAERKRRQVISERFIALSAIIPGLKKVS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00165 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 182 IPR011598 GO:0046983
Trre16g00165 182 PANTHER BHLH TRANSCRIPTION FACTOR 24 181 - -
Trre16g00165 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00165 Trre-Chr16 1121396 1122068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00165 96 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 44.681 2.42e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00165 - - tpra:123883331 274.633