Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00162 ATGTTCCGCCGCGCCACGTCTACTTTCCTCTCTCGCGCCGCCGCTACTCGCAGATTCTCCACCGATGTGGCTACCCCCGCCGCTGATTCTGCTTTCCATGAAGCTTGGAGGAAAGTTAGCCCCAATCTAGACCCACCAAAGACACCTCTCGAATTCCTCAAAGCTCGTCCTCCAGTTCCTTCTACGCTTCCTACTAAACTCACTGTCAATTTCGTTCTTCCTTATTCTTCTCAATTGGCCGCTAAAGAGGTTGATATGGTTATAGTCCCAGCTACAACTGGCCAGATGGGTGTTCTCCCAGGACATGTCCCAACAATTGCTGAGTTGAAACCTGGGGTCCTGTCTGTACATGAAGGGAATGACACAACCAAGTATTTTGTAAGCAGTGGCTTTGTCTTCATCCATGCAAACTCTGTTGCTGATATTATCGCTGTTGAGGCTGTCCCAGTGGATCAAATTGATGCAAGCCAAGTGCAGAAGGGTCTTCAAGAGTTCACTCAGAAGCTCAACTCAGCATCAACTGACTTGGAGAAAGCTGAAGCCCAGATTGGAGTTGATGTGCATAGCGCTCTCAACTCAGCTCTTACAGGCTAA 594 0.4899 MFRRATSTFLSRAAATRRFSTDVATPAADSAFHEAWRKVSPNLDPPKTPLEFLKARPPVPSTLPTKLTVNFVLPYSSQLAAKEVDMVIVPATTGQMGVLPGHVPTIAELKPGVLSVHEGNDTTKYFVSSGFVFIHANSVADIIAVEAVPVDQIDASQVQKGLQEFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00162 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre16g00162 197 FunFam ATP synthase delta 56 153 - -
Trre16g00162 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
Trre16g00162 197 Coils Coil 162 182 - -
Trre16g00162 197 Gene3D - 56 153 IPR036771 -
Trre16g00162 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre16g00162 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Trre16g00162 197 NCBIfam ATP synthase F1 subunit epsilon 78 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre16g00162 197 Gene3D - 154 196 - -
Trre16g00162 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 29 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00162 Trre-Chr16 1097519 1100168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00162 1 197 Primary Pumps ATPases AT5G47030 69.756 4.24e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00162 K02134 - gmx:100780778 327.405