Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00158 ATGAAGTGCTTTTCCATTTTCAAAGATAAGTACAAGGGTAGGGGTCAAAGATCAGCACCTGAACTAAAAGAGCAAGAGAAACATCAATTTTCAGGATCTGATAGAGTTACTAAGTCTTCTTGTTCATCTACCTCTTCACCTAGGGGTATACCAAAACTTTATGAGGAAAAAGGTCATAATTTGAGGGTGTTTTCGTTCTCCGAGCTTAAACGTGCAACAAACGATTTCAATAGGCTTCTTAAAATAGGTGAAGGTGGATTTGGAAGTGTTTTTAAAGGTTCAATTAAACCTGTTGATGGAAATGGTGATCCTGTCTTAGTTGCCATCAAAAGACTTAACAAGGATGCATTGCAGGGTCATAAGGAATGGTTAACAGAAGTTCAGTTTCTTGGTGTTGTTGAGCATCCGAACCTTGTAAAGCTCATTGGATACTGTGCTGTGGATGGTGAGAGAGGGATCCAAAGATTACTCGTGTATGAATACATGTCGAATAGAAGCTTAGAAGCTCATCTTTTCAATAAAGCTTATGATCCTGTGCCTTGGAAAACAAGACTTGAAATTGTACTTGGAGCAGCTCAAGGCTTAACGTATCTCCACGAAGAATTAGAAGTCCAGGTGATATATCGCGATTTTAAATGCTCAAATGTGCTACTGGATGAAAATTTTAAGCCAAAACTTTCTGATTTCGGACTCGCTAGGGAGGGACCGGTAGCTGGAGATACTCATGTTTCAACTGCTGTAATGGGGACACATGGTTATGCCGCTCCGGATTACATTGAGACAGGCCATCTCACAGCCAAGAGTGATGTATGGAGTTTCGGCGTTGTTCTATACGAAATACTTACCGGTAGGCGCTCATTAGCAAGACACAGGCCGAAAACTGAACAAAAACTATTGGAGTGGGTGAAGAACTATCCTCACGATAGCAAAAAATTCGACACAATAATGGATCCAAGACTTGAAGGACAGTATTCAATTAACGCAGCACGAAAAATCGCTAAGCTCGCGGATCATTGTCTGCGTAAGAGCTCAAAAGATAGGCCGTCAATGAGTCAAGTGGTAGAGAGATTGAAAGAAATAATACAATCTTCTGATGAAGAACAAGAAGAACATGAACCTAATGAGGTAAACACTGTTGAGGTATCCGAAAATGATTCAGTTGAGCATCAAGAAGAAACAAATCAATCAGGCTCAACTGAGTTATGGAGAAAGAGAATGGAACATCTTGCAAAACTTGGTGAACATGTGGAGGATTCTAGTAGAAGAAGGTTTATGATCCAACATCAACTTAGAGCCAATGTGTCTACATAG 1311 0.402 MKCFSIFKDKYKGRGQRSAPELKEQEKHQFSGSDRVTKSSCSSTSSPRGIPKLYEEKGHNLRVFSFSELKRATNDFNRLLKIGEGGFGSVFKGSIKPVDGNGDPVLVAIKRLNKDALQGHKEWLTEVQFLGVVEHPNLVKLIGYCAVDGERGIQRLLVYEYMSNRSLEAHLFNKAYDPVPWKTRLEIVLGAAQGLTYLHEELEVQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVAGDTHVSTAVMGTHGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSLARHRPKTEQKLLEWVKNYPHDSKKFDTIMDPRLEGQYSINAARKIAKLADHCLRKSSKDRPSMSQVVERLKEIIQSSDEEQEEHEPNEVNTVEVSENDSVEHQEETNQSGSTELWRKRMEHLAKLGEHVEDSSRRRFMIQHQLRANVST 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00158 436 MobiDBLite consensus disorder prediction 362 402 - -
Trre16g00158 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre16g00158 436 FunFam PTI1-like tyrosine-protein kinase 3 162 371 - -
Trre16g00158 436 MobiDBLite consensus disorder prediction 12 33 - -
Trre16g00158 436 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Trre16g00158 436 CDD STKc_IRAK 82 360 - -
Trre16g00158 436 PANTHER OS01G0588500 PROTEIN-RELATED 40 361 - -
Trre16g00158 436 MobiDBLite consensus disorder prediction 374 390 - -
Trre16g00158 436 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Trre16g00158 436 MobiDBLite consensus disorder prediction 12 49 - -
Trre16g00158 436 MobiDBLite consensus disorder prediction 34 49 - -
Trre16g00158 436 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00158 436 SUPERFAMILY Protein kinase-like (PK-like) 59 382 IPR011009 -
Trre16g00158 436 Gene3D Transferase(Phosphotransferase) domain 1 162 387 - -
Trre16g00158 436 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00158 Trre-Chr16 1072801 1075662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00158 62 357 Glycoside Hydrolase AT3G07070 49.664 7.44e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g00158 PK_Tyr_Ser-Thr 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00158 - - psat:127076679 763.451