Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00155 ATGTCCTTCAATCAATCAAAAACCGAAAAGAACGACGCCGTTTATCGAAAATCTGGGCGATCGTCTAGCTTTAATCAGCAGAGAGGTCCCCCAGGTGGTTATGGATGGGGCAGCGGCGGGCCTGCTCCGTCACTCTCCTCTAACAAGAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCAATATAGGGCAAACCCTTCCCCAGTGAATTCAACAGAGTCAAACAATGCTCCTGCTGCTCGAGGCACACATAATGGTACTCACGTGCAACCACAATTGCATGGAGCATCTGATGGGCCGGTTGCAAAGGCATCTGAATCAACAGCACAGAGGAGCCCTAAAGTTGTTCCAAATGCACCAACTACTCAACCTCCCCCTGCTGTGAGCTCTGATACAACCGCTCCTACAAGCCCTGCTAAGGGAGATGCATCAAAGGCGTTCCCTTTTCAGTTTGGATCGATTGTCCCTGGCTTTATGAATGGGGTGGCAATTCCTCCTCGTACAAGCTCAGCTCCTCCTAATTTAGACGAGCAGAAGCATGCTCAGGCCCATCATGACTCTGTTAGATCCGCTGTGCCTTCAGTGCCAATACCTCCTGTTCCGAAGCAGCAGCAACCACCTAGGAATGATGCAGGTGTAACTGAGAAATCTAATGCCAGGGAGACTCATCTGGGGGCTAAGGCTAAAAAGGATCCCCAGGTGCCAGTTTTGACCCCAGCAACCCAGATGCAGAAGCCTTCTGTTGTTCCTGTAACTGGGATTTCAATGTCAACACCATTTCAGCAGCAGTCACAGGCACCTTTACAGTTTGGCGGTCCTAATCCACAGATTCAATCTCAGGGGATGTCCTCGACACCCCTCCACATTCCTATACCGATGCCTATACCACTTGGAAATGTTCCACAAGTGCAACAGCCAGTTTTTGTTCCAGGTCTCCAGCCTCATCCGATGCACCCTCATGGGATCATGCATTCAGGCCATAACATAAGTTTCACTCATCCAATGGGCCATCAGTTGCCCCATCAATTGGGCAACATGGGCATTGGCATGGGCCCTCAATATCCCCAGCAGCAGGGTGGACAATTTGCCGGTCCTCGAAAAACTACTCCTGTCAAGATAACTCATCCTGATACACATGAAGAGCTGAGGCTTGATAAAAGGACAGATGGATATTCAGATGGGGGGTCATCTGGTGCTAGGTCGCATCCTAATGTACCTTCTCAATCTCAACCTGTTAAATCGATTGCCACTTCTCAGCCTACGAATTATTATCCTTCCAGCTCATATGGTTCTAGTTCTCCCTATTATCAACCTAATTCAATTCCATCAACAAATAGCCAAATAACTCCCAATGCTCAGCCACCAATATTTAATTATCCTGTGAACAATGGTCCACAAAATGTGGCTTTCATGAATTCGTCGTCTCTTAATTCTCAGCCTGTTAATAAAGTCAGCACTCCTATTCCTCGCATTGCTGAACCCCCCACTGTAGAACGTTCTCGTGAAGTGCCTAATGTGATATCATCCGCTTCAACGGGGGTTGCTTCTGTGACTATTAAACCAAGTGCCGTGTCTGCTGTTGCGGACTCATCATTGACTAATTCTAGTATATGTGGTGTTCAAAATACCGAGACTCCTAGTTCAGCAGCATCTAGCGATGCTAGCTCCCCTTTACCACAAAAAGGGTCTGAAACTTTCTCAGAAATCTCTACAGGAAAATCTAAATCTTCTGAAGATTCTTCAGTTTTGAGTTCATTGCCAAAACAATCTGCTGCATCTGTTGTTGTCAGTGCTGAGAAGCCTACGATGCCACCTTCGTCAGCTGTGACTGTGGATTCTGTTTCAGTTGTGACTAATAATGAAGCCAGCATGAGGGAACCTATTAGCGGGTCCAACTCTTTAAAGGATAACCAGAAGAAACCTGGAAAAAAAGGTCAATCATCTCAAGATCAGGATACTGTGCAATCTCCTCGAGTGGCGAATGTGCCGTCTGGAGCTGTTGAAATTGGTATATCTGATACTAAGGTTTCCACACCTGTAGGAAGTGAAACAAACCATTCTCCGGCAGTTATCGCTGCAGATCTTCCCATATCTGAAGGATCTATTGCTAAAGTGGCTGATAGTTTGAGTGATCATAAGCATGATAAGATAGATGAATCATCTGAAGATCTGCAGTCTGCTGATGTACCAGAAACAACAAAGGAAATTAATGACAGTGCAGAGAATGCTTGCAGCGACTCAATGTCTCTTTCAGCGTCAGGTATCAAGGATAGACCAAGTTTAGAAGCAAATAAAGCAAAAGTTACATCTAAAGGGAGGAAGAAATTAAAAGAGATTCTCCAGAAAGCAGATGCTGCTGGGTCAACTTATGATCTTTATAATGCATACAAAGGACCTGAGGAAAAGAAAGAAACTGTCTTAATTTCAGAGAGCACAGAAAATGAATCTACATCTGAAGGTTTAAAGCAGTTATCTGCAGATTCTGCTCAGTTAGATTCTCCTGTAAGTGAGAAATGTGGTCACAATAAAGCTGAACCTGATGACTGGGAGGATGCAGCTGACATTTCTACACCAAAACTTGGAGTTGATGATAAATCTCAAGAGGTTATTGATGGAATTGGAAGTACAGCAAAAAAGTATTCACGCGATTTTCTTTTGAAATTCGCAGAGCAATGCATTACTCTTCCTGAAGGTTTTGAGATTACGGCAGACATTGTTGACCCTTTGATGAGTTTCAATAATTCTCGTGATTCACATCCTAGTCCTGGAAGAAACGTAGACAGGTCAAGGATGGAACGCCGTGGGAATGTTGTGGCTGAGGAAGACAGATGGAATAAAGCTGCCAATGCTTTTCATTCTGGGCGTGGTTTGGATGTTATTGGTGGTAATGGCGGTCGGCACGGCCAAGGAAGAAATTTTGGTGTTTTAAGAAATCCTGGTGGACAGGTATCCCCCCAATTTACTGGGGGTATCCTTTCTGGACCAATGCAATCTGTGGGAAATCAGGGTGGAATGCAAAGAAATAGCCCTGACGGGGAGAGGTGGCAGCGTTCTACTAGCTTCCAGCAGAGGGGTTTAATTCCCTCACCTCAGTCTCCCTTACAGATGATGCACAGGGCCGAGAAAAAGTATGAAGTGGGTAAAGTCTCAGATGCGGAAGAGGCAAAGCAGAGGCAGCTGAAGGCTATCTTGAACAAACTAACTCCTCAGAATTTTGATAGACTTTTTGAACAGGTAAAAGCAGTTAATATTGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTCGAGAAAGCTCTGATGGAGCCTACCTTCTGTGAAATGTATGCCAATTTCTGCTCCCATCTGGCTACTGAGTTGCCTGATTTGAGTGTGGACAATGAAAAGATAACTTTTAAAAGGTTATTATTAAACAAATGCCAGGAGGAATTTGAGAGGGGTGAAAGAGAACAAGAAGAGGCAAATAAGGCTGATGAGGGTGAGGTCAAGCTATCAAATGAAGAAAGGGAGCTGAGAAGAACCAAGGCAAGAAGGCGCATGTTAGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCACGAGTGTATCAAAAAGTTACTAGGTCAGTGTCAAGATCCTGATGAGGAAGATGTTGAAGCTTTGTGCAAGCTGATGAGTACTATTGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGTTGAAAATATTATCAAACAACATGAATTTGTCTTCTAGGGTGAGGTTTATGTTGAAGGATGTAATTGATTTGAGAAGGAATAGATGGCAACAAAGGAGAAAAGTTGATGGTCCAAAGAAGATTGAGGAGGTACACAGGGATGCTGTGCAAGAGAGGCAGGCTCAAGCTCAAGTTGGTAGGATGGGTCGTGGTATGGGAAACAATCAATCTGCAAGAAGGAACCCCCCCATGGATTTTGGTGCTAGAGGATCATCTATGTTGTCTCCTCCTGCTCAGATGGGTGGACCGCGTGGGCTGCCTACACAAGCACGTGGATATGGTTTACAGGATGCTCGTTTTGAAGAAAGGCAATCTTATGAGCCTAGGCCCTTGTCAGTTAATTTGCCTCAAAGACCCTTGGGTAATGATATAACATTGGTACCCCAAGGTGGTCTTGCTAGGGGAATGGCCATGAGAGGATCAACAATTTCTCATTTGTCAATACCTGATGTGCATTCTAGCCACGGAGACTCTCACAGAATGCCTGGCGGTATTAATGGTTATAGCAATTCATCTGAGCGCACACCGTATGGCTCAAGGGAGGATCTTGCATCAAGATATATTTCAGACAGATCTTCAAGTCTAGCTGGATATGATCATTCAAGTGCTCCAGGTCATAATATAAACTATGGTAACAGAGACTTAAGGAATGATGATCGGAATCTCGACAGGCCTGTTACAACTCCACCTCACACTCAGTTGCAAGGGCCAATTGTCTCCCAAAATGCTTCTTCAGAGAATGCTTGGCCAGAGGAACGACTACGGGACATGTCCTTGTCAACAATCAGAGAATACTACAGTGCTAGAGATGTAAATGAAGTTGCTCAATGCATCAGAGATTTGAACTCTCCAGCCTTTCATCCTTCCATGGTTTCTGTATGGGTCATGGACTCATATGAGAGAAAGGACACTGAAAGAGATCTTTTGGCCAAACTGCTTGTCAAACTTGGCAAATCTCAGGATGGCCTATTAAGTCAAACTCAGCTTAACGAAGGGTTCGTGAAAGTTCTCTGTACATTGGAGGATGATGTTAATGACGCTCCCAGGGCACCAGAGTTTCTTGGTCGTATTTTTGCAGAACTTATAACAGAGAGTATAGTCAGTTTGAATGAGATCGGCCAATTAATACATGATGGTGGAGAGGAGCCAGGCAGTCTCTTAGAATTTGGACTTGCAGCTGATGTTCTCGGAAGCACCTTGGAGGCAATAAAACATGAGAAAGGCGACGCTGTTCTAAGTGAGATTCAAACAAACTCAAACTTGCGGTTGGAGACTTTCCGACCACCGAATAATTCTACTACGTCAAGGAAGCTGGAGAAATTTATTTAG 5124 0.4434 MSFNQSKTEKNDAVYRKSGRSSSFNQQRGPPGGYGWGSGGPAPSLSSNKSFNKKSNNAQGGQYRANPSPVNSTESNNAPAARGTHNGTHVQPQLHGASDGPVAKASESTAQRSPKVVPNAPTTQPPPAVSSDTTAPTSPAKGDASKAFPFQFGSIVPGFMNGVAIPPRTSSAPPNLDEQKHAQAHHDSVRSAVPSVPIPPVPKQQQPPRNDAGVTEKSNARETHLGAKAKKDPQVPVLTPATQMQKPSVVPVTGISMSTPFQQQSQAPLQFGGPNPQIQSQGMSSTPLHIPIPMPIPLGNVPQVQQPVFVPGLQPHPMHPHGIMHSGHNISFTHPMGHQLPHQLGNMGIGMGPQYPQQQGGQFAGPRKTTPVKITHPDTHEELRLDKRTDGYSDGGSSGARSHPNVPSQSQPVKSIATSQPTNYYPSSSYGSSSPYYQPNSIPSTNSQITPNAQPPIFNYPVNNGPQNVAFMNSSSLNSQPVNKVSTPIPRIAEPPTVERSREVPNVISSASTGVASVTIKPSAVSAVADSSLTNSSICGVQNTETPSSAASSDASSPLPQKGSETFSEISTGKSKSSEDSSVLSSLPKQSAASVVVSAEKPTMPPSSAVTVDSVSVVTNNEASMREPISGSNSLKDNQKKPGKKGQSSQDQDTVQSPRVANVPSGAVEIGISDTKVSTPVGSETNHSPAVIAADLPISEGSIAKVADSLSDHKHDKIDESSEDLQSADVPETTKEINDSAENACSDSMSLSASGIKDRPSLEANKAKVTSKGRKKLKEILQKADAAGSTYDLYNAYKGPEEKKETVLISESTENESTSEGLKQLSADSAQLDSPVSEKCGHNKAEPDDWEDAADISTPKLGVDDKSQEVIDGIGSTAKKYSRDFLLKFAEQCITLPEGFEITADIVDPLMSFNNSRDSHPSPGRNVDRSRMERRGNVVAEEDRWNKAANAFHSGRGLDVIGGNGGRHGQGRNFGVLRNPGGQVSPQFTGGILSGPMQSVGNQGGMQRNSPDGERWQRSTSFQQRGLIPSPQSPLQMMHRAEKKYEVGKVSDAEEAKQRQLKAILNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLATELPDLSVDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEERELRRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQDPDEEDVEALCKLMSTIGEMIDHPKAKEHMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQQRRKVDGPKKIEEVHRDAVQERQAQAQVGRMGRGMGNNQSARRNPPMDFGARGSSMLSPPAQMGGPRGLPTQARGYGLQDARFEERQSYEPRPLSVNLPQRPLGNDITLVPQGGLARGMAMRGSTISHLSIPDVHSSHGDSHRMPGGINGYSNSSERTPYGSREDLASRYISDRSSSLAGYDHSSAPGHNINYGNRDLRNDDRNLDRPVTTPPHTQLQGPIVSQNASSENAWPEERLRDMSLSTIREYYSARDVNEVAQCIRDLNSPAFHPSMVSVWVMDSYERKDTERDLLAKLLVKLGKSQDGLLSQTQLNEGFVKVLCTLEDDVNDAPRAPEFLGRIFAELITESIVSLNEIGQLIHDGGEEPGSLLEFGLAADVLGSTLEAIKHEKGDAVLSEIQTNSNLRLETFRPPNNSTTSRKLEKFI 1707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00155 1707 ProSiteProfiles MI domain profile. 1518 1642 IPR003891 -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 395 453 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 126 140 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 993 1033 - -
Trre16g00155 1707 Pfam MA3 domain 1523 1631 IPR003891 -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 761 777 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 619 637 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 839 859 - -
Trre16g00155 1707 Pfam MIF4G domain 1058 1279 IPR003890 GO:0003723|GO:0005515
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1305 1325 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 707 724 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1 236 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1459 1513 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1459 1473 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 619 668 - -
Trre16g00155 1707 FunFam Eukaryotic translation initiation factor 4G 1058 1293 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1416 1445 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 41 93 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 707 777 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 727 755 - -
Trre16g00155 1707 Coils Coil 1140 1180 - -
Trre16g00155 1707 Coils Coil 1700 1707 - -
Trre16g00155 1707 SMART if4_15 1058 1280 IPR003890 GO:0003723|GO:0005515
Trre16g00155 1707 MobiDBLite consensus disorder prediction 104 118 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1429 1443 - -
Trre16g00155 1707 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 352 1707 IPR045208 GO:0003743
Trre16g00155 1707 MobiDBLite consensus disorder prediction 829 860 - -
Trre16g00155 1707 SUPERFAMILY ARM repeat 1052 1282 IPR016024 -
Trre16g00155 1707 FunFam Eukaryotic translation initiation factor 4G 1512 1706 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 993 1031 - -
Trre16g00155 1707 SUPERFAMILY ARM repeat 1512 1705 IPR016024 -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 1491 1513 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 543 587 - -
Trre16g00155 1707 SMART ma3_7 1519 1633 IPR003891 -
Trre16g00155 1707 Gene3D - 1058 1293 - -
Trre16g00155 1707 Gene3D - 1512 1707 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 352 453 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 215 229 - -
Trre16g00155 1707 MobiDBLite consensus disorder prediction 373 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00155 Trre-Chr16 1045606 1055154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00155 1 1706 Eukaryotic Initiation Factors Gene Family AT3G60240 44.621 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00155 K03260 - gmx:100798562 2127.83