Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00139 ATGCCTCCGAAGACGACGAAAAGAGGGGCGGCGGCCAGTGGTGCGAAGAGAGGCGGCAGAGCACCGAGAGGTACATCTAAGGCTGCACAGAATCAACAGCAGCAACCTGAACCTGTGGAGGAGAAGGCGGTGATTGAGGAAGAACCTAAGGTAGAAGAGAATCCTGTTGTTGAGGAAAAACCTGTGGTGGAAGAGAATCCTGTTGAAGATAAAGCTATTGATATGAATGAAATTGCTCCTGAGGCTGCTGCAGAAGAGGCCAAGACGGTGAAAAAAGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAGAAAGATGAACGACTAGATTTGGAGGATCATGATCCTGAGTATGAACCTGAAGAGTATGGTGGGGTTGATTATGATGAGAAGGAAATTGAGCAGGAAGAGGGTCATGAGGTGGGAGATGAAGTTGAGGAAGAAACTGAAGATAATGTTGGTGAAGAAGAAGGTGATTCAGGTGAGGAAGAAGTAGAAGATGGCCATGATGAAATTGAGGGTGAAGAGGATGACGAGCATGCTGATGAGGAGCACGAGCATGCAGTGATGGCTGATGTGGAAGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACCGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTAATGATGAATCCTCAGACGAGAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGAGGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTTTACTTGGGAAACATATGCAAGACATGGACAACGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACGAACCGTGGGTTTGCATTCTTGGAATTTTCCTCTCGTTCAGATGCAATGGACGCCTTTAAGAGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGATCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTCTCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGTGAAGTTGAAAAGATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACCTTTGGTTCACATGATGCTGCTATAAGATGTGCTGAGAGCATCACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAAGTGAGGGCTAGGTTATCAAGGCCTCTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTACCGCCCTGGTCGTGGACCTGCAATAATGTCGAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCACGCGGGGCAAGAGGAATCGGAAGTCGTGCTCTGCCGCCAGTGAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTGTACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGCTGCTGCATATTCAAAAAGTAGTGTGAAGAGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGGATGGCCTCTGAAAGACGTCCATCGTATAGGGATTATCCTCCCCGTGGATCTGACTACTCCGATCTCCCTAGAAGTACAGCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCTCCTCCTCCACCTGCCCCCCATTCAAGTTATCGTGAAGGGCGCCCTCGTGATTATGATGCTATATCTGGCTCAAAACGTTCTTATGCTGCCGTGGATGATGTTCCACCGCGATACGCCGAATCTGGTGCTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTAGCAGTGCTTCACAATATGGTGACACTTACGGTGATAGAGTTGGGAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGGCAAGGGATGAGTTATGGTGGAGGCTCTTATGGTGGTAGTGACGCTGGAGGCATGTACTCATCAAGTTATGGTGGCGATTATGTTTCTCGTGGAAGTGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGTGCAGGTGGCGGTAGCAGTTACATGGGAAGTGGTGGATCGGGGTCTTATTATTGA 2391 0.4676 MPPKTTKRGAAASGAKRGGRAPRGTSKAAQNQQQQPEPVEEKAVIEEEPKVEENPVVEEKPVVEENPVEDKAIDMNEIAPEAAAEEAKTVKKDEEEVKESIDEYEKDERLDLEDHDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEETEDNVGEEEGDSGEEEVEDGHDEIEGEEDDEHADEEHEHAVMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTRKNKGFAFLRFENVEQAKRAVEELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTTEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFLDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGPAIMSRPSWSRPAPRSFSSRGARGIGSRALPPVRPISARDRRPVMSVPVRSRPLPPPARSYDRRPAAAAYSKSSVKRDYGRREDLPPPRSRVAADYGSRMASERRPSYRDYPPRGSDYSDLPRSTARAAPRRGYVDDGYSQRYERPPPPPAPHSSYREGRPRDYDAISGSKRSYAAVDDVPPRYAESGARQSRARLEYDYGSSASQYGDTYGDRVGRSSLGYGSGSRSSISGQDSHGMYSSRQGMSYGGGSYGGSDAGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00139 796 SUPERFAMILY RNA-binding domain, RBD 207 290 IPR035979 GO:0003676
Trre16g00139 796 CDD RRM_SF 214 285 - -
Trre16g00139 796 FunFam Heterogeneous nuclear ribonucleoprotein Q 293 375 - -
Trre16g00139 796 CDD RRM_SF 391 465 - -
Trre16g00139 796 MobiDBLite consensus disorder prediction 469 656 - -
Trre16g00139 796 Gene3D - 293 375 IPR012677 -
Trre16g00139 796 SUPERFAMILY RNA-binding domain, RBD 290 456 IPR035979 GO:0003676
Trre16g00139 796 FunFam RNA recognition water-stress protein1 379 500 - -
Trre16g00139 796 MobiDBLite consensus disorder prediction 708 732 - -
Trre16g00139 796 MobiDBLite consensus disorder prediction 114 183 - -
Trre16g00139 796 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 35 796 - -
Trre16g00139 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 471 IPR000504 GO:0003723
Trre16g00139 796 MobiDBLite consensus disorder prediction 1 185 - -
Trre16g00139 796 CDD RRM_SF 294 361 - -
Trre16g00139 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 360 IPR000504 GO:0003723
Trre16g00139 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Trre16g00139 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 456 IPR000504 GO:0003723
Trre16g00139 796 MobiDBLite consensus disorder prediction 770 796 - -
Trre16g00139 796 MobiDBLite consensus disorder prediction 84 113 - -
Trre16g00139 796 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 145 292 - -
Trre16g00139 796 SMART rrm1_1 293 372 IPR000504 GO:0003723
Trre16g00139 796 SMART rrm1_1 213 286 IPR000504 GO:0003723
Trre16g00139 796 SMART rrm1_1 390 465 IPR000504 GO:0003723
Trre16g00139 796 MobiDBLite consensus disorder prediction 711 732 - -
Trre16g00139 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 376 IPR000504 GO:0003723
Trre16g00139 796 Coils Coil 87 110 - -
Trre16g00139 796 Gene3D - 127 292 IPR012677 -
Trre16g00139 796 MobiDBLite consensus disorder prediction 565 579 - -
Trre16g00139 796 Gene3D - 379 494 IPR012677 -
Trre16g00139 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Trre16g00139 796 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00139 Trre-Chr16 937620 941517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00139 214 493 Eukaryotic Initiation Factors Gene Family AT4G34110 23.102 2.01e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00139 - - aprc:113850151 929.472