Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00127 ATGTCTCTGCCGGAATCACAACTCGATCCAAATCTCTTTCTCCATGAACAATCCTGGCACCTCTTATCACTACTGCTGCAGATCGGTCATCCCGTCGACGCCGGTTATCTATCTTCCCGTTGCCGATTATTCAACGCTTCTCCCAATTTCATCCGTTTCGTTGCATCGCTTTCTGATTCTCCTCTCTCTGTTAACAGTAACGGTCTTCTAACTCCTTCTGTTACAGCAGCTTTGTCCATCGCTAGGTTTTTCAAAGTTCATTTCAATAATTCAACTCCATCGAATTCTCGAAAACGCAAGTTGATTTTGTCAATTACTGAAGGTGGAAGAGATGCTAAACGACTAGCAATTGGTGATAAAGTTCCAGAATTTTTCGTCAGGAGTTTTTCTGATACTACTGCAGAGGCTATGATGAGAAGTTTCCGTGCAATGCAATTTGAGTCTCGGATTATGCATGGAGGGAATAGGATTCCTATACGTATTGATACAATTAGAGAGTGTTTAGGTCGTTCGAAACCAAATTTTGAATACAGGGAAGCTGATAATGATGGCATAACAAATGCGGCCCAGGGAGATATTTATGACTTTCTGATCAAAACCAGCGAGAGTTTTTTCATTAATGAAAGTGGCTTGATGAAGCTTGATATGGATATAGATAGACTTGCAGGGAATAATCCCTTTGCGAATATTCCTCCACCAACTAATGTCCAGGATCAATCTCTTTGTAATGAGGGTGGTGTTGTTGGTATTGGATCAGAGAAGAAAATGGATTGCTTTGACACATTTGGGAATGAATATCCTGAACAAAATATAACCCCTACTGTGGATGGTGATGATGTTTGTAGAAACAATACTTGCAAAGATCAACTACGGGAATCTAACGAAATAAACGAAGAGGAAAGAGGTCCAAACGAAGGACTAATTAATGATGACAAAAATAGAGAGATGGAAGATGTTGCTCAGAGGGTCAATCCAATAGTATTTGGAGAAGAGCCAACAAAAGTTTTGGAATTTAAAAAGGGCATGCATGTATTAGATTTGGAGAAAAACAAGAGAGCAAGAAGCATGGTGACCCGGTCTACCAATAAAGCAGCTCAGTCCTCTTCAAATCCAAAGCAGGTTCTGAAAACTCCTCGCATATTGAAGGGAGGACTGAAAAATGATCAACATTCAATGACTCAAATTCTAACAGAATCACTAGCCTGTAACAAATTTGATAATGTTCCAAACAAAATTGATCAATGTAAAGATGATCAGAACATTATTGCAAAAAACAAACTTAAACAAAGCCGTAAAGAAAACATGGCAGAAGATAACTCCATGACTTCTAAGGTGGAGAAAAAAACATTTCCATCTTTTGAGTCTTTTATAATAGAGGAGGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCCCAAAGAAAAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGTAATGCTCATAAAAACCATGTAAATAATGAGCGCAATATGCTTGAGCGTTTTGGGGGTAAAAGCTTTATTATAAAGTTTGAAGGTTCGTTCAAAAGTGCCAACAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGGCCTGAGGTTTTGAAAAAAGAAATTGATATAACCGAGCTTCAGTGGTATGGGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAGAGAGGGTGTCGTTCACCGAGATGTCAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAATATCGGAAGTAAATCAAAACCAAGCTTTGATGCATCCAATAATATTCCTCTGCCTTCTGGTCCTTCCTCGGTGGTTCAAGAAAATAATCTTGGAGGAATCAATTCTCTAACATCCAATAAAAGGGAATTGACATATCATAGGAAATATTCTGAAATTAATAGGCATATGAAGCCAAAGGCTAATGCTGGTCATCTGAAAAATTGTCCTGATAAGGCTGTTGCGAATTTACGTAGAGCACCAGGAGCAGATGGCTCAGGTATAACCTCTGCCAAAGATATTACTAGCACTAAGACTGCTTCTGCTGATAGGCTCCGAGAACCCATACCTTTCCGAGGAAGAAAAGAGCTTATCAGCCTTGTGCAGAATTCTATGCAATGTGCAAACAGTAGTTCAATTAAAAGTCCTTCTTCTCAGAGGAAAAGAGTTACTGCTCCTTCAAGCAAGGCAGATGGAAGGACACTTCATCTTACGCCGATGCCTATACATTCATCTACGGTTGCAGTGGGATCATTTAGAAGCAAAGGGGATGGAAAACATAAAAGAGAGGGCCCTTGTGTTGGAACAAAGGGATTTCGTGCCCCAGAGGTTTTATTGAGGTCTCAGATTCAAGGAACAAAGGTTGATATTTGGTCAGCTGGAGTCACTCTACTATACATGCTGATGGGAAAAACTTCTTTCCCTGGCGAACCAGAACAGAGTTTAAAAGAAATTGCCAAATTGCGGGGAAGTGAAGAGCTTTGGGAAGTGGCCAAGCTGCATGACCGTGAAGCATCCTTTCCATTGGAGTTATTTGATGACCAGTACTTGAAATCATACGACATAGAAACCTGGTGCAAGACTCACACAAAAAGACCTGAGTTTGTTGATCAAGTCCCGAAATCATTGTTTGATTTAATAGACAAGTGTCTAACAGTAAACCCAAGGAGTAGGATTAGTGTTGATGAAGTTCTAAGGCATGAGTATTTTTCTAATTGTAATCGTATCCTGAGAAAGCAAAGGATGATGCGACTCGGCTTAGACAGTGACGATTAA 2841 0.3988 MSLPESQLDPNLFLHEQSWHLLSLLLQIGHPVDAGYLSSRCRLFNASPNFIRFVASLSDSPLSVNSNGLLTPSVTAALSIARFFKVHFNNSTPSNSRKRKLILSITEGGRDAKRLAIGDKVPEFFVRSFSDTTAEAMMRSFRAMQFESRIMHGGNRIPIRIDTIRECLGRSKPNFEYREADNDGITNAAQGDIYDFLIKTSESFFINESGLMKLDMDIDRLAGNNPFANIPPPTNVQDQSLCNEGGVVGIGSEKKMDCFDTFGNEYPEQNITPTVDGDDVCRNNTCKDQLRESNEINEEERGPNEGLINDDKNREMEDVAQRVNPIVFGEEPTKVLEFKKGMHVLDLEKNKRARSMVTRSTNKAAQSSSNPKQVLKTPRILKGGLKNDQHSMTQILTESLACNKFDNVPNKIDQCKDDQNIIAKNKLKQSRKENMAEDNSMTSKVEKKTFPSFESFIIEEEEGSGGYGIVYRAQRKTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKSFIIKFEGSFKSANSDCFVLEHVEHDRPEVLKKEIDITELQWYGFCMFKALACLHREGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPSFDASNNIPLPSGPSSVVQENNLGGINSLTSNKRELTYHRKYSEINRHMKPKANAGHLKNCPDKAVANLRRAPGADGSGITSAKDITSTKTASADRLREPIPFRGRKELISLVQNSMQCANSSSIKSPSSQRKRVTAPSSKADGRTLHLTPMPIHSSTVAVGSFRSKGDGKHKREGPCVGTKGFRAPEVLLRSQIQGTKVDIWSAGVTLLYMLMGKTSFPGEPEQSLKEIAKLRGSEELWEVAKLHDREASFPLELFDDQYLKSYDIETWCKTHTKRPEFVDQVPKSLFDLIDKCLTVNPRSRISVDEVLRHEYFSNCNRILRKQRMMRLGLDSDD 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00127 946 ProSiteProfiles Protein kinase domain profile. 456 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00127 946 FunFam Kinase like protein 766 936 - -
Trre16g00127 946 MobiDBLite consensus disorder prediction 613 639 - -
Trre16g00127 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Trre16g00127 946 FunFam Probable serine/threonine-protein kinase DDB_G0291918 448 614 - -
Trre16g00127 946 SMART serkin_6 456 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00127 946 MobiDBLite consensus disorder prediction 730 747 - -
Trre16g00127 946 MobiDBLite consensus disorder prediction 680 710 - -
Trre16g00127 946 Gene3D Transferase(Phosphotransferase) domain 1 765 940 - -
Trre16g00127 946 Pfam Protein kinase domain 788 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00127 946 Pfam Protein kinase domain 460 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00127 946 Gene3D Transferase(Phosphotransferase) domain 1 420 611 - -
Trre16g00127 946 SUPERFAMILY Protein kinase-like (PK-like) 441 929 IPR011009 -
Trre16g00127 946 MobiDBLite consensus disorder prediction 730 760 - -
Trre16g00127 946 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 407 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00127 Trre-Chr16 822625 829001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00127 789 928 Core Cell Cycle Gene Families AT3G48750 34.722 9.65e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Trre16g00127 Pkinase 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00127 K02214 - gmx:100795742 1085.48