Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00126 ATGTCTCTGCCGGAATCACAACTCGATCCAAATCTCTTTCTCCATGAACAATCCTGGCACCTCTTATCACTACTGCTGCAGATCGGTCATCCCGTCGACGCCGGTTATCTATCTTCCCGTTGCCGATTATTCAACGCTTCTCCCAATTTCATCCGTTTCGTTGCATCGCTTTCTGATTCTCCTCTCTCTGTTAACAGTAACGGTCTTCTAACTCCTTCTGTTACAGCAGCTTTGTCCATCGCTAGGTTTTTCAAAGTTCATTTCAATAATTCAACTCCATCGAATTCTCGAAAACGCAAGTTGATTTTGTCAATTACTGAAGGTGGAAGAGATGCTAAACGACTAGCAATTGGTGATAAAGTTCCAGAATTTTTCGTCAGGAGTTTTTCTGATACTACTGCAGAGGCTATGATGAGAAGTTTCCGTGCAATGCAATTTGAGTCTCGGATTATGCATGGAGGGAATAGGATTCCTATACGTATTGATACAATTAGAGAGTGTTTAGGTCGTTCGAAACCAAATTTTGAATACAGGGAAGCTGATAATGATGGCATAACAAATGCGGCCCAGGGAGATATTTATGACTTTCTGATCAAAACCAGCGAGAGTTTTTTCATTAATGAAAGTGGCTTGATGAAGCTTGATATGGATATAGATAGACTTGCAGGGAATAATCCCTTTGCGAATATTCCTCCACCAACTAATGTCCAGGATCAATCTCTTTGTAATGAGGGTGGTGTTGTTGGTATTGGATCAGAGAAGAAAATGGATTGCTTTGACACATTTGGGAATGAATATCCTGAACAAAATATAACCCCTACTGTGGATGGTGATGATGTTTGTAGAAACAATACTTGCAAAGATCAACTACGGGAATCTAACGAAATAAACGAAGAGGAAAGAGGTCCAAACGAAGGACTAATTAATGATGACAAAAATAGAGAGATGGAAGATGTTGCTCAGAGGGTCAATCCTGTAGCATGTGGAGAAGAGCCAACGCAAGTTTTGGAATTGAAAAAGGGTATACTAAGAGAATCTAATGAAAATAGTAAAGAAGAGGAAATAGGTTTAAAGGAAGGATTGATTAGTTATGAGAAAAATAGAGAGATGGAAGATGTTGCTCAACAGGTCAATCCAATAGTATTTGGAGAAGAGCCAACAAAAGTTTTGGAATTTAAAAAGGGCATGCATGTATTAGATTTGGAGAAAAACAAGAGAGCAAGAAGCATGGTGACCCGGTCTACCAATAAAGCAGCTCAGTCCTCTTCAAATCCAAAGCAGGTTCTGAAAACTCCTCGCATATTGAAGGGAGGACTGAAAAATGATCAACATTCAATGACTCAAATTCTAACAGAATCACTAGCCTGTAACAAATTTGATAATGTTCCAAACAAAATTGATCAATGTAAAGATGATCAGAACATTATTGCAAAAAACAAACTTAAACAAAGCCGTAAAGAAAACATGGCAGAAGATAACTCCATGACTTCTAAGGTGGAGAAAAAAACATTTCCATCTTTTGAGTCTTTTATAATAGAGGAGGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCCCAAAGAAAAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGTAATGCTCATAAAAACCATGTAAATAATGAGCGCAATATGCTTGAGCGTTTTGGGGGTAAAAGCTTTATTATAAAGTTTGAAGGTTCGTTCAAAAGTGCCAACAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGGCCTGAGGTTTTGAAAAAAGAAATTGATATAACCGAGCTTCAGTGGTATGGGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAGAGAGGGTGTCGTTCACCGAGATGTCAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAATATCGGAAGTAAATCAAAACCAAGCTTTGATGCATCCAATAATATTCCTCTGCCTTCTGGTCCTTCCTCGGTGGTTCAAGAAAATAATCTTGGAGGAATCAATTCTCTAACATCCAATAAAAGGGAATTGACATATCATAGGAAATATTCTGAAATTAATAGGCATATGAAGCCAAAGGCTAATGCTGGTCATCTGAAAAATTGTCCTGATAAGGCTGTTGCGAATTTACGTAGAGCACCAGGAGCAGATGGCTCAGGTATAACCTCTGCCAAAGATATTACTAGCACTAAGACTGCTTCTGCTGATAGGCTCCGAGAACCCATACCTTTCCGAGGAAGAAAAGAGCTTATCAGCCTTGTGCAGAATTCTATGCAATGTGCAAACAGTAGTTCAATTAAAAGTCCTTCTTCTCAGAGGAAAAGAGTTACTGCTCCTTCAAGCAAGGCAGATGGAAGGACACTTCATCTTACGCCGATGCCTATACATTCATCTACGGTTGCAGTGGGATCATTTAGAAGCAAAGGGGATGGAAAACATAAAAGAGAGGGCCCTTGTGTTGGAACAAAGGGATTTCGTGCCCCAGAGGTTTTATTGAGGTCTCAGATTCAAGGAACAAAGGTTGATATTTGGTCAGCTGGAGTCACTCTACTATACATGCTGATGGGAAAAACTTCTTTCCCTGGCGAACCAGAACAGAGTTTAAAAGAAATTGCCAAATTGCGGGGAAGTGAAGAGCTTTGGGAAGTGGCCAAGCTGCATGACCGTGAAGCATCCTTTCCATTGGAGTTATTTGATGACCAGTACTTGAAATCATACGACATAGAAACCTGGTGCAAGACTCACACAAAAAGACCTGAGTTTGTTGATCAAGTCCCGAAATCATTGTTTGATTTAATAGACAAGTGTCTAACAGTAAACCCAAGGAGTAGGATTAGTGTTGATGAAGTTCTAAGGCATGAGTATTTTTCTAATTGTAATCGTATCCTGAGAAAGCAAAGGATGATGCGACTCGGCTTAGACAGTGACGATTAA 3003 0.3963 MSLPESQLDPNLFLHEQSWHLLSLLLQIGHPVDAGYLSSRCRLFNASPNFIRFVASLSDSPLSVNSNGLLTPSVTAALSIARFFKVHFNNSTPSNSRKRKLILSITEGGRDAKRLAIGDKVPEFFVRSFSDTTAEAMMRSFRAMQFESRIMHGGNRIPIRIDTIRECLGRSKPNFEYREADNDGITNAAQGDIYDFLIKTSESFFINESGLMKLDMDIDRLAGNNPFANIPPPTNVQDQSLCNEGGVVGIGSEKKMDCFDTFGNEYPEQNITPTVDGDDVCRNNTCKDQLRESNEINEEERGPNEGLINDDKNREMEDVAQRVNPVACGEEPTQVLELKKGILRESNENSKEEEIGLKEGLISYEKNREMEDVAQQVNPIVFGEEPTKVLEFKKGMHVLDLEKNKRARSMVTRSTNKAAQSSSNPKQVLKTPRILKGGLKNDQHSMTQILTESLACNKFDNVPNKIDQCKDDQNIIAKNKLKQSRKENMAEDNSMTSKVEKKTFPSFESFIIEEEEGSGGYGIVYRAQRKTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKSFIIKFEGSFKSANSDCFVLEHVEHDRPEVLKKEIDITELQWYGFCMFKALACLHREGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPSFDASNNIPLPSGPSSVVQENNLGGINSLTSNKRELTYHRKYSEINRHMKPKANAGHLKNCPDKAVANLRRAPGADGSGITSAKDITSTKTASADRLREPIPFRGRKELISLVQNSMQCANSSSIKSPSSQRKRVTAPSSKADGRTLHLTPMPIHSSTVAVGSFRSKGDGKHKREGPCVGTKGFRAPEVLLRSQIQGTKVDIWSAGVTLLYMLMGKTSFPGEPEQSLKEIAKLRGSEELWEVAKLHDREASFPLELFDDQYLKSYDIETWCKTHTKRPEFVDQVPKSLFDLIDKCLTVNPRSRISVDEVLRHEYFSNCNRILRKQRMMRLGLDSDD 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00126 1000 SUPERFAMILY Protein kinase-like (PK-like) 494 983 IPR011009 -
Trre16g00126 1000 Gene3D Transferase(Phosphotransferase) domain 1 819 994 - -
Trre16g00126 1000 SMART serkin_6 510 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00126 1000 MobiDBLite consensus disorder prediction 667 693 - -
Trre16g00126 1000 MobiDBLite consensus disorder prediction 784 801 - -
Trre16g00126 1000 MobiDBLite consensus disorder prediction 734 764 - -
Trre16g00126 1000 FunFam Probable serine/threonine-protein kinase DDB_G0291918 502 668 - -
Trre16g00126 1000 Pfam Protein kinase domain 514 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00126 1000 Pfam Protein kinase domain 842 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00126 1000 FunFam Kinase like protein 820 990 - -
Trre16g00126 1000 ProSiteProfiles Protein kinase domain profile. 510 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00126 1000 MobiDBLite consensus disorder prediction 784 814 - -
Trre16g00126 1000 Gene3D Transferase(Phosphotransferase) domain 1 474 665 - -
Trre16g00126 1000 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 464 988 - -
Trre16g00126 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00126 Trre-Chr16 822625 829001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00126 843 982 Core Cell Cycle Gene Families AT3G48750 34.722 8.07e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Trre16g00126 Pkinase 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00126 K02214 - gmx:100795742 1058.9