Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g00108 | ATGACCACAACGAAACCGGTTAATGGTAATTATAATGATATGGTAGGTGAGTTCGCTTATGGATCTGGAATTGTCAATCCACAACAAGCTATTCACCCAGGATTGATTTATGACATTACTAAGCAAGATTATATGCAAATGCTTTGTAATTTTGGTTATAATGATGCCAAAATTGAACAAATTAGTGGAGAAAAATCAAGTTGCTATGGAGCTTCGAATAAAAATTTGGTTAAAGATATAAACTATCCTGCACTAGTGATTCTTCTTAGGCCTCATAAGCGTTTTAATGTTAATATTCATAGAACAGTGACAAATGTTGACTCTCCTAACTCATGCTACACAACTACTATCATCCCAATTCCAAATATCAAGATTAAAGTGGTGCCAAAACTTCTCTCATTCAAATCCTTATATGAGAAACAAGCATTTGTTGTCATTGTTACCGAAGGAGCAAAATCAAATCAAACTATGTTTTCTTCATCACTTGTCTGGTCAGACGGAACCCACAATGTAAAGAGTCCAATTATTATACAAAAACTCTCTTAA | 546 | 0.337 | MTTTKPVNGNYNDMVGEFAYGSGIVNPQQAIHPGLIYDITKQDYMQMLCNFGYNDAKIEQISGEKSSCYGASNKNLVKDINYPALVILLRPHKRFNVNIHRTVTNVDSPNSCYTTTIIPIPNIKIKVVPKLLSFKSLYEKQAFVVIVTEGAKSNQTMFSSSLVWSDGTHNVKSPIIIQKLS | 181 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g00108 | 181 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 1 | 176 | IPR045051 | - | |
| Trre16g00108 | 181 | Pfam | Fibronectin type-III domain | 79 | 177 | IPR041469 | - | |
| Trre16g00108 | 181 | Gene3D | - | 48 | 180 | - | - | |
| Trre16g00108 | 181 | Gene3D | Peptidase S8/S53 domain | 1 | 44 | IPR036852 | GO:0004252|GO:0006508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g00108 | Trre-Chr16 | 714983 | 715528 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g00108 | 1 | 177 | Subtilisin-like Serine Gene Family | AT3G46850 | 43.017 | 9.06e-47 | 160 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g00108 | - | - | mtr:11439741 | 228.024 |