Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00097 ATGGAGAGGTATTCAGAGTCAAAGGTACTTCCTCGAAACTTGCCGATTCTGGTTGAGGTATCGCCGCACACGGCCAATGCAAGAGAGGTGGGTCAGAGTCAGAGACTAAATGGGCAGGAGTTTTCAAATGCTAGGTGGATTTCAGCAAGAGAATTGAATCAATTGTCGCAGGCAAGGGATGTGCCTATGACACGTTTGGCCTCGATTAGAGAAGTGGCGCAGTTGTCGAATGCACGGATATTATTGGTTAGAGATGATATGGATTTTGATACTAGAGAGTCTCCAGAATCTATCTCCTTTGAGCCTACTAGAACATGGAAAGGAAAGCATTCATTATCTGAAGGAGAAGATCTGATGTATGATGTAGACACATTGAAGGGTAGCAGTGATTCCTTTGAGGATGGTGATCCGAGTTTATTTGCTGGTGCTAGTCATCCCCCAGAACCTGTTGATACAGATCTTATGAGAACGGTTTATGTACCGATAGGTCAGAACAAATCTGAGGCCGGATGCTTAATTAAGAACTTGCCCGTGAAGGGCCCTTTTCTGGAAGATCTCTCGATCCGTGTTCCTGGGAAGAAACCAAGTCCAATTGTTCTTTCCCCTCAAGGAAGTCTGATTGAAGAACTAAACGACACTGGGAACTTATCTTCGCCTTTTGCAGGTTCTCGAGTATCTCAGAATACTGACAACTCTCTCCTGGTTACAGATTCCGAGGAAAAGGAATGTGTTTGGGATGCTTCTCTGCCTCCTACTCCTAGTGGCAATGTCAGTCCACATAGTAGTATCGATAGTATTGGTGTTGTCAAGGCAATGAGCATTGCGAATAGTTGTGCTAGTACTTATCGGAGTGATGCAATGACCAGTGACGGCATGCTTAGTTTAGATAGGAATTTTGATAGCACTAAGGGTAGTGTAAGGGGTGATTCACTTGAAAGTGCAAAAACTAGTGCGAGTCGTGCAAGTGATAGTAGTGGCCTCAGCGATGACAGTAACTGGAGCAACCTTACTGGTAGTGCAAATAAGCCTCACAAAGGAAATGATCCCAGGTGGAATGCTATCCTTGCCGTCCGATTACGAGATGGAATTTTGGGCATGAGTCATTTTCGATTACTCAAACGACTTGGATGTGGTGACATTGGTAGTGTATATCTCTCGGAGCTGAGTGGAACTCGGTGTTATTTCGCAATGAAAGTTATGGACAAGGCATCCCTAGCAAGCAGAAAGAAGCTGACTAGAGCACAGACAGAGAGAGAGATATTGCAGTTGCTGGATCATCCATTTCTTCCAACTTTGTATACACATTTTGAGACTGACCGTTTCTCCTGTTTGGTAATGGAATATTGTCCTGGGGGTGACCTACACACTTTAAGGCAGCGGCAACCAGGGAAACATTTCTCTGAATATGCTGCACGCTTCTATGCTGCCGAGGTCCTGCTTGCTCTCGAATATCTTCACATGCTTGGAGTTGTGTACAGAGACCTTAAACCTGAAAATGTGTTGGTACGAGATGATGGTCACATAATGCTCTCAGATTTTGATCTTTCCCTCAGATGTACCGTTTTGCCTACTCTTGTTAGAGGTTATGACGGTGACCCTTCAAAACGGGCTGGGGGTGCATTCTGTGTTCAGCCTGCTTGTATTGAGCCAGCATCAGTATGCATACAACCTGCATGTTTTATTCCTCGGCTCTTTCCTCAGAAAAACAAGAAATCGAGGAAACCAAGAGCTGAACCTGGTTTTCCTTCCAGCAGACTTCCAGAGCTTGTTGCCGAGCCTACCGCTGCTCGATCTATGTCCTTCGTCGGAACCCATGAATACCTTGCTCCTGAAATTATCAAAGGGGAAGGTCATGGAAGTGCGGTTGATTGGTGGACATTCGGAATATTCTTGCATGAACTTTTATATGGTAAAACCCCTTTCAAAGGGTCAGGAAACCGTGCTACGCTTTTCAACGTAGTAGGTCAGCAGCTCAAATTTCCCGAATCACCTGCGACCAGTTACGCCAGCAGGGATCTGATCCGCGGCTTACTAGTGAAAGAGCCGCAACATCGTCTTGGGGTTAAGAGAGGTGCAACCGAGATAAAACAGCATCCTTTCTTTGAAGGTGTTAACTGGGCATTGATTAGGTGTAGCACACCACCAGAAGTGCCAAGACCAGTGGAAAATGAGCCGCCACCGCCACCACCAATGAAGGTTGGACCACCAATTGACGCTGTTAGAATTGGCAGTACTAGTAAGAGGATGTCAGGTAATAATGAAATGAAGTCCGGGGGTAAATATCTTGATTTTGAGTTCTTCTAG 2304 0.4549 MERYSESKVLPRNLPILVEVSPHTANAREVGQSQRLNGQEFSNARWISARELNQLSQARDVPMTRLASIREVAQLSNARILLVRDDMDFDTRESPESISFEPTRTWKGKHSLSEGEDLMYDVDTLKGSSDSFEDGDPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLIKNLPVKGPFLEDLSIRVPGKKPSPIVLSPQGSLIEELNDTGNLSSPFAGSRVSQNTDNSLLVTDSEEKECVWDASLPPTPSGNVSPHSSIDSIGVVKAMSIANSCASTYRSDAMTSDGMLSLDRNFDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNLTGSANKPHKGNDPRWNAILAVRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVLPTLVRGYDGDPSKRAGGAFCVQPACIEPASVCIQPACFIPRLFPQKNKKSRKPRAEPGFPSSRLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENEPPPPPPMKVGPPIDAVRIGSTSKRMSGNNEMKSGGKYLDFEFF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00097 767 MobiDBLite consensus disorder prediction 718 735 - -
Trre16g00097 767 FunFam Serine/threonine-protein kinase D6PK-like 367 452 - -
Trre16g00097 767 SUPERFAMILY Protein kinase-like (PK-like) 350 731 IPR011009 -
Trre16g00097 767 Pfam Protein kinase domain 370 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00097 767 Pfam Protein kinase domain 598 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00097 767 CDD STKc_phototropin_like 367 717 - -
Trre16g00097 767 Gene3D Phosphorylase Kinase; domain 1 367 452 - -
Trre16g00097 767 Gene3D Transferase(Phosphotransferase) domain 1 597 718 - -
Trre16g00097 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Trre16g00097 767 MobiDBLite consensus disorder prediction 716 736 - -
Trre16g00097 767 FunFam serine/threonine-protein kinase D6PK-like 453 520 - -
Trre16g00097 767 ProSiteProfiles Protein kinase domain profile. 369 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00097 767 SMART serkin_6 369 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00097 767 PANTHER FLIPPASE KINASE 1-RELATED 128 724 - -
Trre16g00097 767 MobiDBLite consensus disorder prediction 297 347 - -
Trre16g00097 767 Gene3D Transferase(Phosphotransferase) domain 1 453 519 - -
Trre16g00097 767 MobiDBLite consensus disorder prediction 297 342 - -
Trre16g00097 767 FunFam serine/threonine-protein kinase D6PK-like 596 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00097 Trre-Chr16 641365 643957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00097 1 767 AGC Kinase Gene Family AT2G44830 64.875 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g00097 Pkinase 2.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00097 - - mtr:25500048 1421.76