Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00094 ATGAACACTCATGTTTGGAAGAGCAATGTGAACGGCTATGATCATTTTGAACCTTCCACAGCGACATCGTTTCAAGACACGCCGGCTTCGGCAGCAACAGTGTCGCCAATTTCCCAGAGTCCCAGTTTCCGGAGCATTGTCTTGGCGGAGAATTGGGCAGAGCTTCCGTTGAAGGAGGATGATACTGACGACATGGTAATCTACGGGGCTTTGCATGAAGCTGCAACTACCACTGGCTGGTTCCCCGGTAGTAACAACGGGTTGAACAATGTCAATGTAGCCGTGAAAATAGAAGATCAAGGACAAAGCAGTGGCACTTCGGAGGCGCGTTTGAATCACGTGCCAATGAGTAGTAAAAGTTTAGGCTACCGTGGAGTGAGGCGAAGGCCTTGGGGGAAGTATGCTGCCGAAATAAGGGATTCTAAGCGAAATGGTGCGAGGGTGTGGCTTGGGACTTATGAAACAGCTGAGAATGCAGCTTTGGCTTATGATCGAGCTGCGTTTAAATTACGTGGCTCGAAAGCCAAGCTGAATTTTCCTCACTTAATCGGTTCAGATTACACTGAATTGGTTAATATCACGCGAAAAGAGCACTAG 597 0.4824 MNTHVWKSNVNGYDHFEPSTATSFQDTPASAATVSPISQSPSFRSIVLAENWAELPLKEDDTDDMVIYGALHEAATTTGWFPGSNNGLNNVNVAVKIEDQGQSSGTSEARLNHVPMSSKSLGYRGVRRRPWGKYAAEIRDSKRNGARVWLGTYETAENAALAYDRAAFKLRGSKAKLNFPHLIGSDYTELVNITRKEH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00094 198 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Trre16g00094 198 PRINTS Ethylene responsive element binding protein signature 162 182 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 Pfam AP2 domain 122 172 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 ProSiteProfiles AP2/ERF domain profile. 122 180 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Trre16g00094 198 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 PANTHER DNA-BINDING DOMAIN 94 181 IPR044808 GO:0003700|GO:0009873
Trre16g00094 198 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Trre16g00094 198 FunFam Ethylene-responsive transcription factor 2 121 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00094 Trre-Chr16 620217 620813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00094 39 193 AP2-EREBP Transcription Factor Family AT2G44840 54.839 2.07e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00094 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00094 K09286 - gmx:100793366 258.84