Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00093 ATGGATGCTACAATATTTATGTGTAGTGATTTCCCTTCATTTGAATCTCTTCAAATTGAAAACCACTTGTTTGATCTTGAACTTGAACACCCTTTCATCATGGATGCTGCTAATTCCAACCATCAAATGTCCGATTCATCCTTGTACGGTTCATTTCCCAGTCCCATGTTACTAGATTCTAATGTCAACCACGACGCGTGTAAAGTCGGATCATCAACAGCTTCGTGTAAACCTCGTGTGCCTGTACCGGAATGGAAGCGGTATAGAGGCGTGAGGCGAAGGCCCTGGGGCAAATTTGCCGCCGAGATAAGGGATCCAAAGAAGAATGGATCTAGAGTTTGGCTTGGAACTTACAAAACCGAAGAAGAAGCTGGTTTGGCTTACGATAGAGCTGCTTTCAAAATGCGTGGTAGAAAAGCCAAGCTCAATTTTCCCCACCTCATCGGCTCTGATTTGCCAATGGAGCCGATGATAGTGGTGGAAGCTTCGGAGAAGAGCCCGCGGGAAGCTAATTCGGATTCCTCGGGAGGGATAATAAAGAAGAGGAAGAACTTAGTTGATGTATTGAATAGGTTAGCTAATATTAAAAGACAATTAAGTGGAGGATTTGAAATGGGTTTAGGTAGTGTTGATGATGTTCATGTTCATCAATGTCTGAATGATTCTGTGCTGTAA 675 0.4311 MDATIFMCSDFPSFESLQIENHLFDLELEHPFIMDAANSNHQMSDSSLYGSFPSPMLLDSNVNHDACKVGSSTASCKPRVPVPEWKRYRGVRRRPWGKFAAEIRDPKKNGSRVWLGTYKTEEEAGLAYDRAAFKMRGRKAKLNFPHLIGSDLPMEPMIVVEASEKSPREANSDSSGGIIKKRKNLVDVLNRLANIKRQLSGGFEMGLGSVDDVHVHQCLNDSVL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00093 224 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 PRINTS Ethylene responsive element binding protein signature 127 147 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 FunFam Ethylene-responsive transcription factor 2 86 146 - -
Trre16g00093 224 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 PANTHER DNA-BINDING DOMAIN 72 166 IPR044808 GO:0003700|GO:0009873
Trre16g00093 224 SUPERFAMILY DNA-binding domain 87 146 IPR016177 GO:0003677
Trre16g00093 224 CDD AP2 86 147 IPR001471 GO:0003700|GO:0006355
Trre16g00093 224 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00093 Trre-Chr16 611889 612563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00093 12 187 AP2-EREBP Transcription Factor Family AT2G44840 44.886 7.96e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00093 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00093 K09286 - gmx:100527194 197.978