Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00092 ATGGTGGAGGGGACCTTGTCTCTTGATGCTGTTATAAGGGAAGCTGTTGATCTGGAGAACATTCCTATTGAGGAGGTTTTTGATAATCTCAAATGCACAAAAGAAGGTTTAAGCTCTGAGCAAGTACAAAATAGGCTTGATATGTTTGGATACAATAAACTTGAAGAAAAGAAGGAAAGTAAAATACTAAAGTTTTTAGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTATGGCACATGGAGGAAGAAAGCCAGATGGAAGTAAGAAACCTGGAGATTATCAAGATTTTGTTGGCATAATTATTTTGCTAATTATAAACTCTACCATAAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCTCCAAAAGCAAAGGTACTTCGTGACGGAAAATGGAGCGAAGAAGACGCTTCAGTGTTGGTCCCTGGAGACATAGTAAGTATCAAGCTAGGTGACATTATTCCTGCGGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTGACAAAACATCCTGGAGAAGGAGTATATTCTGGTTCAACCTGCAAGCAAGGAGAAATTGAGGCCATAGTCATTGCAACTGGAGTTCACACATTTTTTGGGAAAGCAGCTCATCTTGTCGAAAACACAACACATGTTGGACATTTCCAGCAGGTTCTGACATCTATTGGGAATTTCTGTATATGTTCAATTGCTATTGGAATGATAATTGAAATCATTGTGATATATGGCGTCCACGGATATGGATACAGAAATGGTATTGATAACCTTCTCGTGCTACTTATCGGTGGGATCCCTATTGCTATGCCAACTGTTCTTTCAGTTACAATGGCTATTGGTTCGCATAAATTGTCTCAGCAGGGCGCCATAACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTTCAGTGGACAGGGAGATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATTTGGTTGTACTTATGGCTGCAAGAGCATCGAGGATGGAGAACCAGGATGCAATTGATTGTGCAATCGTTTCAATGTTGGCAGACCCAAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTACTATGCACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACATAATAAGGCAGAAATTAGCCAGAAAGTTCATGCAATGATTGACAGGTTTGCAGAACGTGGACTTCGTTCTCTTGGGGTTGCTAGACAGGTAGTACCTGAGGGAACTAAGGACAGTCCAGGAGGACCATGGGAGTTTGTTGCCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATTAGAAGAGCTCTTGATCTTGGTGTTAGTGTCAAAATGATCACCGGTGATCAACTTGCAATAGGAAAGGAAACAGGAAGGCGTCTCGGGATGGGGACTAACATGTATCCTTCATCGTCACTGCTTGGCGAAAATAAAGATCAATTAGGTTCTGTCTCCATTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAACACAAGTATGAGATTGTGAAGAGATTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAACGATGCACCTGCCTTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCACGGAGCGCTTCTGACATAGTGCTGACAGAACCTGGTTTGAGTGTCATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTATCTATCACTATTCGTATTGTGTTGGGTTTCATGTTACTTAACGCCTTTTGGAGTTTCGACTTTCCACCCTTTATGGTTCTTATCATTGCAATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCACTTCCAGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGGTTATTCTTGGTACCTATCTGGCTCTAATGACAGTGATCTTCTTCTATGTAATGTTTGAAACAAACTTTTTTCCTAACCATTTTGGTGTGAAACACATCCGCCCTGATCTTCATGCTCCTGTCACTGAAGAAATGAAAGCGATGTTTGCTTCTGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATCTTTGTGACACGGTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTTTTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGCTATATCAGCATTTGCTAATTGGGAAATTGCTGGAATCAGAAGAATAGGTATGGGCTGGGCAGGAGTCATTTGGTTGTTCAACATTGTAACTTATGTTTTTCTTGATCCTTTAAAGTTTGCTGTGGCTTATCAACAAAGCGGAAGGGCTTGGAATCTGGTGGTAAACCAAAGAACTGCATTCACCAACAAAAATGATTTTGGTAAAGAATCTCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGTCTTCGCACTTTTGAGTCGAAAGGGTTTGCAGAGAAGCACAACAACCATAGGGAAATAAATACAATGGCAGACGAGGCTAAGAGGCGAGCAGAGTTAGCAAGGTTGAGAGAGCTTCACACTTTGAAAGGAAGAGTGGAATCTTTTGCCAGGCTAAGGGGTCTGGACGTTGAGACCATGAATGGGCACTACACTGTCTAA 2904 0.4201 MVEGTLSLDAVIREAVDLENIPIEEVFDNLKCTKEGLSSEQVQNRLDMFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGRKPDGSKKPGDYQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAIVIATGVHTFFGKAAHLVENTTHVGHFQQVLTSIGNFCICSIAIGMIIEIIVIYGVHGYGYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDREMIEVFAKGVDKDLVVLMAARASRMENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGTMHRVSKGAPEQILNLAHNKAEISQKVHAMIDRFAERGLRSLGVARQVVPEGTKDSPGGPWEFVALLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDQLGSVSIDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNAFWSFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVILGTYLALMTVIFFYVMFETNFFPNHFGVKHIRPDLHAPVTEEMKAMFASAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVFAFVIAQLVATAISAFANWEIAGIRRIGMGWAGVIWLFNIVTYVFLDPLKFAVAYQQSGRAWNLVVNQRTAFTNKNDFGKESREAAWAAEQRTLHGLRTFESKGFAEKHNNHREINTMADEAKRRAELARLRELHTLKGRVESFARLRGLDVETMNGHYTV 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00092 967 Pfam E1-E2 ATPase 138 316 - -
Trre16g00092 967 NCBIfam HAD-IC family P-type ATPase 109 544 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 NCBIfam HAD-IC family P-type ATPase 570 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 SUPERFAMILY HAD-like 333 642 IPR036412 -
Trre16g00092 967 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Trre16g00092 967 ProSitePatterns E1-E2 ATPases phosphorylation site. 339 345 IPR018303 -
Trre16g00092 967 SFLD C1.7: P-type atpase like 319 646 - -
Trre16g00092 967 FunFam Plasma membrane ATPase 349 496 - -
Trre16g00092 967 Gene3D - 349 496 IPR023299 GO:0000166
Trre16g00092 967 Gene3D - 916 967 - -
Trre16g00092 967 CDD P-type_ATPase_H 36 857 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00092 967 Gene3D - 140 224 - -
Trre16g00092 967 SFLD p-type atpase 319 646 IPR044492 -
Trre16g00092 967 PANTHER CALCIUM-TRANSPORTING ATPASE 19 899 - -
Trre16g00092 967 Gene3D - 334 632 IPR023214 -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 618 630 - -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 337 351 - -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 595 614 - -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 187 201 - -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 491 502 - -
Trre16g00092 967 PRINTS P-type cation-transporting ATPase superfamily signature 513 523 - -
Trre16g00092 967 Pfam haloacid dehalogenase-like hydrolase 333 609 - -
Trre16g00092 967 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 822 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00092 967 FunFam Plasma membrane ATPase 490 643 - -
Trre16g00092 967 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 859 IPR023298 -
Trre16g00092 967 PRINTS H+-transporting ATPase (proton pump) signature 567 583 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 PRINTS H+-transporting ATPase (proton pump) signature 626 651 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 PRINTS H+-transporting ATPase (proton pump) signature 776 797 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 PRINTS H+-transporting ATPase (proton pump) signature 453 471 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 PRINTS H+-transporting ATPase (proton pump) signature 595 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00092 967 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Trre16g00092 967 FunFam Plasma membrane ATPase 140 224 - -
Trre16g00092 967 SUPERFAMILY Calcium ATPase, transduction domain A 140 237 IPR008250 -
Trre16g00092 967 FunFam ATPase 4 plasma membrane-type 579 831 - -
Trre16g00092 967 Gene3D - 102 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00092 Trre-Chr16 590242 596271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00092 8 967 Primary Pumps ATPases AT5G62670 78.356 0.0 1508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00092 K01535 - gmx:100794938 1613.2