Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00090 ATGGTGGAGGAGACCATGGTGGAGGGGACCTTGTCTCTTGATGCTGTTATAAGGGAAGCTGTTGATCTGGAGAACATTCCTATTGAGGAGGTTTTTGATAATCTCAAATGCACAAAAGAAGGTTTAAGCTCTGAGCAAGTACAAAATAGGCTTGATATGTTTGGATACAATAAACTTGAAGAAAAGAAGGAAAGTAAAATACTAAAGTTTTTAGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTATGGCACATGGAGGAAGAAAGCCAGATGGAAGTAAGAAACCTGGAGATTATCAAGATTTTGTTGGCATAATTATTTTGCTAATTATAAACTCTACCATAAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCTCCAAAAGCAAAGGTACTTCGTGACGGAAAATGGAGCGAAGAAGACGCTTCAGTGTTGGTCCCTGGAGACATAGTAAGTATCAAGCTAGGTGACATTATTCCTGCGGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTGACAAAACATCCTGGAGAAGGAGTATATTCTGGTTCAACCTGCAAGCAAGGAGAAATTGAGGCCATAGTCATTGCAACTGGAGTTCACACATTTTTTGGGAAAGCAGCTCATCTTGTCGAAAACACAACACATGTTGGACATTTCCAGCAGGTTCTGACATCTATTGGGAATTTCTGTATATGTTCAATTGCTATTGGAATGATAATTGAAATCATTGTGATATATGGCGTCCACGGATATGGATACAGAAATGGTATTGATAACCTTCTCGTGCTACTTATCGGTGGGATCCCTATTGCTATGCCAACTGTTCTTTCAGTTACAATGGCTATTGGTTCGCATAAATTGTCTCAGCAGGGCGCCATAACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTTCAGTGGACAGGGAGATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATTTGGTTGTACTTATGGCTGCAAGAGCATCGAGGATGGAGAACCAGGATGCAATTGATTGTGCAATCGTTTCAATGTTGGCAGACCCAAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTACTATGCACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACATAATAAGGCAGAAATTAGCCAGAAAGTTCATGCAATGATTGACAGGTTTGCAGAACGTGGACTTCGTTCTCTTGGGGTTGCTAGACAGGTAGTACCTGAGGGAACTAAGGACAGTCCAGGAGGACCATGGGAGTTTGTTGCCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATTAGAAGAGCTCTTGATCTTGGTGTTAGTGTCAAAATGATCACCGGTGATCAACTTGCAATAGGAAAGGAAACAGGAAGGCGTCTCGGGATGGGGACTAACATGTATCCTTCATCGTCACTGCTTGGCGAAAATAAAGATCAATTAGGTTCTGTCTCCATTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAACACAAGTATGAGATTGTGAAGAGATTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAACGATGCACCTGCCTTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCACGGAGCGCTTCTGACATAGTGCTGACAGAACCTGGTTTGAGTGTCATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTATCTATCACTATTCGTATTGTGTTGGGTTTCATGTTACTTAACGCCTTTTGGAGTTTCGACTTTCCACCCTTTATGGTTCTTATCATTGCAATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCACTTCCAGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGGTTATTCTTGGTACCTATCTGGCTCTAATGACAGTGATCTTCTTCTATGTAATGTTTGAAACAAACTTTTTTCCTAACCATTTTGGTGTGAAACACATCCGCCCTGATCTTCATGCTCCTGTCACTGAAGAAATGAAAGCGATGTTTGCTTCTGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATCTTTGTGACACGGTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTTTTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGCTATATCAGCATTTGCTAATTGGGAAATTGCTGGAATCAGAAGAATAGGTATGGGCTGGGCAGGAGTCATTTGGTTGTTCAACATTGTAACTTATGTTTTTCTTGATCCTTTAAAGTTTGCTGTGGCTTATCAACAAAGCGGAAGGGCTTGGAATCTGGTGACTGCATTCACCAACAAAAATGATTTTGGTAAAGAATCTCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGTCTTCGCACTTTTGAGTCGAAAGGGTTTGCAGAGAAGCACAACAACCATAGGGAAATAAATACAATGGCAGACGAGGCTAAGAGGCGAGCAGAGTTAGCAAGGTTGAGAGAGCTTCACACTTTGAAAGGAAGAGTGGAATCTTTTGCCAGGCTAAGGGGTCTGGACGTTGAGACCATGAATGGGCACTACACTGTCTAA 2907 0.4214 MVEETMVEGTLSLDAVIREAVDLENIPIEEVFDNLKCTKEGLSSEQVQNRLDMFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGRKPDGSKKPGDYQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAIVIATGVHTFFGKAAHLVENTTHVGHFQQVLTSIGNFCICSIAIGMIIEIIVIYGVHGYGYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDREMIEVFAKGVDKDLVVLMAARASRMENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGTMHRVSKGAPEQILNLAHNKAEISQKVHAMIDRFAERGLRSLGVARQVVPEGTKDSPGGPWEFVALLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDQLGSVSIDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNAFWSFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVILGTYLALMTVIFFYVMFETNFFPNHFGVKHIRPDLHAPVTEEMKAMFASAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVFAFVIAQLVATAISAFANWEIAGIRRIGMGWAGVIWLFNIVTYVFLDPLKFAVAYQQSGRAWNLVTAFTNKNDFGKESREAAWAAEQRTLHGLRTFESKGFAEKHNNHREINTMADEAKRRAELARLRELHTLKGRVESFARLRGLDVETMNGHYTV 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00090 968 CDD P-type_ATPase_H 41 862 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00090 968 Pfam E1-E2 ATPase 143 321 - -
Trre16g00090 968 NCBIfam HAD-IC family P-type ATPase 114 549 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 NCBIfam HAD-IC family P-type ATPase 575 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 SMART Cation_ATPase_N_a_2 22 94 IPR004014 -
Trre16g00090 968 Gene3D - 917 968 - -
Trre16g00090 968 Gene3D - 107 836 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 192 206 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 600 619 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 496 507 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 518 528 - -
Trre16g00090 968 PRINTS P-type cation-transporting ATPase superfamily signature 623 635 - -
Trre16g00090 968 SUPERFAMILY HAD-like 338 647 IPR036412 -
Trre16g00090 968 SFLD Haloacid Dehalogenase 324 651 - -
Trre16g00090 968 PANTHER CALCIUM-TRANSPORTING ATPASE 24 900 - -
Trre16g00090 968 Gene3D - 145 229 - -
Trre16g00090 968 Gene3D - 339 637 IPR023214 -
Trre16g00090 968 FunFam Plasma membrane ATPase 145 229 - -
Trre16g00090 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 344 350 IPR018303 -
Trre16g00090 968 Gene3D - 354 501 IPR023299 GO:0000166
Trre16g00090 968 FunFam ATPase 4 plasma membrane-type 584 836 - -
Trre16g00090 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 22 864 IPR023298 -
Trre16g00090 968 FunFam Plasma membrane ATPase 495 648 - -
Trre16g00090 968 FunFam Plasma membrane ATPase 354 501 - -
Trre16g00090 968 PRINTS H+-transporting ATPase (proton pump) signature 572 588 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 PRINTS H+-transporting ATPase (proton pump) signature 458 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 PRINTS H+-transporting ATPase (proton pump) signature 781 802 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 PRINTS H+-transporting ATPase (proton pump) signature 600 616 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 PRINTS H+-transporting ATPase (proton pump) signature 631 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00090 968 SFLD p-type atpase 324 651 IPR044492 -
Trre16g00090 968 NCBIfam plasma-membrane proton-efflux P-type ATPase 41 827 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00090 968 Pfam haloacid dehalogenase-like hydrolase 338 614 - -
Trre16g00090 968 Pfam Cation transporter/ATPase, N-terminus 25 88 IPR004014 -
Trre16g00090 968 SUPERFAMILY Calcium ATPase, transduction domain A 145 242 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00090 Trre-Chr16 590242 596286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00090 13 968 Primary Pumps ATPases AT5G62670 78.148 0.0 1497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00090 K01535 - gmx:100794938 1600.1