Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00081 ATGCTACTGCTCTTATCTTCACCATCTTCTTCATCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTGCTGTACAAGGACAAGGAGAATCAAGTCATGGAAGCACTAATCAAATACCGAAGGATTACATAGTGCAGGAAGAGAAGGTATTAAGGAGGAAACTTGTGATTTCTGTTCTAGTCTCAACTTGTGCTTTTCCAACATTATCTTCACATGCGAAGACCAAAAGTATAAATCCGTATAATGAAAAACGCGTGCTACAACAAAATAAGAATATACAAAAACAAAACAATGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTTAAAGTGATAGCACCAGATGACTATATAAAGCGTGATTCGGGGCTAATATACCGAGACTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCTGGCCGCCGTATTGATAGTACGTATTTGCAAGGCGCTCCTGCTAAAATTCGCATGGGTAACAAGGCTTTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAAAGCAGGTGGAAAGAGAAGAATAATCATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTAATAAGCATACAAAGCTGTGAAAGAAGAGTGATAGTAGGATTTTATTCTGATGTTGTATGCAGTTGA 747 0.3815 MLLLLSSPSSSSLMQSFPLKFLCAVQGQGESSHGSTNQIPKDYIVQEEKVLRRKLVISVLVSTCAFPTLSSHAKTKSINPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDDYIKRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGAPAKIRMGNKALVPGFEEGIRDMKAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELISIQSCERRVIVGFYSDVVCS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00081 248 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 141 227 IPR001179 GO:0003755
Trre16g00081 248 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 144 231 IPR001179 GO:0003755
Trre16g00081 248 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-2, CHLOROPLASTIC 36 248 IPR044239 -
Trre16g00081 248 SUPERFAMILY FKBP-like 67 230 - -
Trre16g00081 248 Gene3D - 81 237 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00081 Trre-Chr16 543266 546785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00081 139 233 Calmodulin-binding Proteins AT5G48570 35.052 2.14e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00081 - - cam:101493728 400.208