Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00072 ATGGGTGAGAAAGATGATGAGTTTAGTTTGGGTTTAGGTTTGAGTTTAAGTTTAGGATGTGGAGATTATGCAAACAATGATAATCAAATTCCTTTGAAGGTGAATCACATGCAAAAGCCACCTCAATCAGTTCCAAACCAAAGGGTTTCATTCAACAACTTGTTCCATACACATGATCTGAGTACCGAAACGAGGTCGTTTCTCCGCGGAATAGACGCAAACTCGCCGCATGCATCTGCTCCGGCGTTCGAAGACGAGAACGGAGTTTCTTCTCCAAACAGCACCGTATCAAGTATCAGTGGAAAGAGAAGCGAAAGAGAAGGCAATGGAGACGAAAACGACGGTGTTGAGAGAACTTCGTGTTCACGTGGTGGTGGAAGTGATGACGATGACGGCGGAGGTTGCGGCGGCGATGGTGATTCTTCAAGGAAGAAGCTGAGGTTGTCAAAGGAACAGTCAATGTTGCTTGAAGAAACTTTCAAGGAGCATAATACACTGAATCCGAAACAAAAGCAAGCATTGGCTAAGCAATTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGACGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGCGAATACTTGAAGAGATGCTGTGAGACTCTGACTGAAGAAAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAATCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGTGTTGCCGTATCATCTGCATCCTCCTCGTCAGCAGCTGCACCCTCTGCTCCAGCTCCAGCTGACTGCAACCCGCCAGGCTCGAGTGTTCAGCGGCCGGTACCTCTCAACCCTTGGGCAGCAATGTCTAGTCAAAACCGTACTCGGCCATGA 918 0.4728 MGEKDDEFSLGLGLSLSLGCGDYANNDNQIPLKVNHMQKPPQSVPNQRVSFNNLFHTHDLSTETRSFLRGIDANSPHASAPAFEDENGVSSPNSTVSSISGKRSEREGNGDENDGVERTSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSAPAPADCNPPGSSVQRPVPLNPWAAMSSQNRTRP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00072 305 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Trre16g00072 305 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Trre16g00072 305 MobiDBLite consensus disorder prediction 86 103 - -
Trre16g00072 305 FunFam Homeobox-leucine zipper protein 18 128 204 - -
Trre16g00072 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 274 - -
Trre16g00072 305 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre16g00072 305 SUPERFAMILY Homeodomain-like 128 200 IPR009057 -
Trre16g00072 305 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Trre16g00072 305 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Trre16g00072 305 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Trre16g00072 305 Coils Coil 205 235 - -
Trre16g00072 305 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Trre16g00072 305 Gene3D - 135 204 - -
Trre16g00072 305 SMART HOX_1 141 203 IPR001356 GO:0003677
Trre16g00072 305 CDD homeodomain 143 200 IPR001356 GO:0003677
Trre16g00072 305 MobiDBLite consensus disorder prediction 262 305 - -
Trre16g00072 305 MobiDBLite consensus disorder prediction 104 118 - -
Trre16g00072 305 MobiDBLite consensus disorder prediction 78 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00072 Trre-Chr16 510874 513704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00072 1 302 Homeobox Transcription Factor Family AT3G60390 58.462 6.91e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g00072 HD-ZIP_N 9.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00072 K09338 - gmx:100798480 399.438