Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00071 ATGAGAGTGATGCTGTTAACCCTTTCACGCCATTTATGTACCAGAAGCAACAACAACAACAGCAACATAACAACAACCTTAAAAACATCAAAACTGAAAATCCCTTGTCGGTACAAAAAGGTTGCAATGTCACAAGCTCAAAAAGCACTCACTGATTACCTCCATGCCACAAGGTCCATCCCTTATGCTTTTGCAGATAAAATTTCCAAAAACTCTTTTCATTCTCTCTCCAATCTCATTTCAAAGTTGGGTTCTTTTTCACCTTCTGATTTCACCAAGAAGCTTGATAAGTACTTAAGGTACAACCCAATTAACGAATTTGAGTTTTTCTTTGAAAGTATTGGAATTCAATATACTCATGTTTCATCTTTGTTGCCTCATGATAAGTTTTTCTTTTGTGAAGATGGGTCACTTCTTGATTCTGCTTGTGCACTTTGTGAATTTGGGTTTCCTTGGGATAAGATTGGTTTGATTTACATGGGGAGTGGTTTTATGTTTAGGAAAAGTGGTTTTGAGTTAAAGGGTAGGCTTAGTTTGTTGAAAAGATATGGTTTTTGTAATGTGCAAATTATTGGGATATGTTTGACTTTTCCTTTTGTTTTTGGTGTGGAGGAAGGGAAGTTTGTTGGTGAGATTGATGGTTTGCTTTCTGATTTGAGGGTTGTGTTTTTGGATTTTGATTTGGGAGGGTGTGTTGATGGGAATGTGGATGTTTGGCATGAGATTTGTAGGAAAATTAAAGTGTTTTATGATTTGAATGATGGTAAGGGGAAGATAGGTGACCTCGTCGGAAGGAATAAACATGTGATTCTTGAATATGGAGAAAAAGAGTTGATTGAAAAGGTTGAGTATTTTTGTAGATTCGGTGTCGAGAAGATGGAAGTAGCTCAGTTGATTCTACAAGGCTCGGAATTGTTGAATCTTGATTTGGAAACGCCGGTGATTAATGTGTTGAAGCTGTTGAAACACATTGGAATGAACTCGAAAGATCTTGGTGATGTAAGGAAAAACTATGCTCATGTGTTGGGAACAATAAAAATGGCTAATCTTCCCAATGTTATGAGAGCTATGGGTTTACGTGAGTGGTTTTTCGATAAAATCAAGGATGGGAATCATAAGCTTTTAGTGAATTTTGTCACGAGCTATCCCAATGAAGAGCATGATAAGGGTTATCGAGATGGTTTGAAGACAATTCATGATGCAAGAACACCAACTCATAATATGAATAAATTGAATTTCATGCATAATATTGGCTTTGGTGAAAATGCTATGACCATGGATATCTTAACTCACTTGCATGGAACAAGCGAAGAGTTACAAGAAAGATTTGATTGCCTTCTACATTTAGGGATTGAATTCTCAAAGTTGTGTAAGATAATCACAAAGAAACCGAAGATTCTAAGCCAAAATCCTGAAACCCTAGAGAAAAAGATTAATTTCCTTTGTCAGGAGATGGGAAAATCCTTAGAGCTTTTGGACACTTTTCCGGGATTTATATGTTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCTATATGTGGGTTATAGAAAAGGGATTGTCTTCCAAAAAATATTCCATTGCAAGCATGATTGCAACTAGTGACAAGAATTTTGTTGGCCGTGCTTTTACAATTCACCCGGCCGCTCCAAAACATTGGTTTGAGCAATTCTATCCCAATAAATTGTGA 1695 0.3664 MRVMLLTLSRHLCTRSNNNNSNITTTLKTSKLKIPCRYKKVAMSQAQKALTDYLHATRSIPYAFADKISKNSFHSLSNLISKLGSFSPSDFTKKLDKYLRYNPINEFEFFFESIGIQYTHVSSLLPHDKFFFCEDGSLLDSACALCEFGFPWDKIGLIYMGSGFMFRKSGFELKGRLSLLKRYGFCNVQIIGICLTFPFVFGVEEGKFVGEIDGLLSDLRVVFLDFDLGGCVDGNVDVWHEICRKIKVFYDLNDGKGKIGDLVGRNKHVILEYGEKELIEKVEYFCRFGVEKMEVAQLILQGSELLNLDLETPVINVLKLLKHIGMNSKDLGDVRKNYAHVLGTIKMANLPNVMRAMGLREWFFDKIKDGNHKLLVNFVTSYPNEEHDKGYRDGLKTIHDARTPTHNMNKLNFMHNIGFGENAMTMDILTHLHGTSEELQERFDCLLHLGIEFSKLCKIITKKPKILSQNPETLEKKINFLCQEMGKSLELLDTFPGFICFDLENRIKPRFRFYMWVIEKGLSSKKYSIASMIATSDKNFVGRAFTIHPAAPKHWFEQFYPNKL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00071 564 PANTHER CGI-12 PROTEIN-RELATED 48 545 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 Pfam mTERF 436 540 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 Pfam mTERF 244 345 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 SMART mt_12 457 488 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 SMART mt_12 489 521 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 SMART mt_12 261 291 IPR003690 GO:0003690|GO:0006355
Trre16g00071 564 FunFam Transcription termination factor MTEF18, mitochondrial 395 555 - -
Trre16g00071 564 Gene3D Transcription termination factor 3, mitochondrial 400 559 IPR038538 -
Trre16g00071 564 Gene3D Transcription termination factor 3, mitochondrial 235 384 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00071 Trre-Chr16 493006 494700 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre16g00071 mTERF 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00071 - - gsj:114418754 707.597