Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00052 ATGTTTGGGCGTGGACCAGCAAGGAAGAGTGATAACACGAAATATTATGATATTCTTGGTGTTTCAAAAAGTGCCAGTGAAGATGAAATCAAGAAAGCCTATAGAAAAGCAGCGATGAAGAACCATCCGGATAAGGGTGGGGATCCTGAGAAATTCAAGGAGTTGGGTCAAGCATATGAAGTGTTAAGTGATCCTGAAAAGAAAGAACTGTATGATCAATATGGTGAAGATGCTCTTAAAGAAGGAATGGGAGGAGGAGGAGGAAGCTCATTTCATAATCCATTCGATATTTTTGAATCATTCTTTGGTGGAGGTTTTGGTGGAGGAGGTTTTGGTGGTGGTGGTCCTTCACGGGGAAGAAGACAGAAGCAAGGAGAAGACGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTTTAATGGCACTACAAAAAAACTATCTCTTTCTAGAAATACGCTGTGCGCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGAAGGTGTTTTGGATGCCAGGGCACAGGTATGAAGATTACCAGACGGCAGATTGGTCTGGGCATGATTCAACAAATGCAACACGTTTGTCCTGAATGCAAAGGAACTGGTGAGGTCATTAGTGAGAGAGATAGATGCCCTCAATGCAAGGGAAACAAGATTAGTCAAGAAAAGAAGGTGCTGGAAGTGCACGTGGAAAAGGGGATGCAGCAGGGTCAAAAGATTGTATTCGAAGGACAAGCTGATGAGGCCCCCGACACAATCACGGGAGACATAGTTTTTGTCTTGCAAGTGAAGGGGCATCCGAAGTTCAGGAGGGACCATGATGACCTCCATATTGAACACACTCTCAGCTTAACTGAGGCTCTCTGTGGATTCCAGTTTAATGTCACACATCTTGATGGAAGGCAACTATTGGTCAAATCAAACCCTGGGGAAGTCGTCAAGCCAGGTCAACATAAAGCTATAAATGATGAGGGAATGCCACAACACAATAGACCCTTCATGAGGGGACGCCTTTACATCAAGTTTAACGTTGAATTCCCAGAATCGGGATTTCTTTCCCCTAGCCAAAGCCTAGAATTAGAAAAGATATTACCTCAAAAGACAAGCAAGAAATTGTCACAAAAGGAGCTAGATGATTGTGAGGAGGCCACCTTGCATGATGTCAATATTGCAGAGGAGATGAGTCGAAAGAAGCAACAATACCGTGAGTCATATGATGACGATGATGATGAAGATGAGCATTCAATGCCTCGGGTACAATGTGCTCAACAGTAA 1284 0.4346 MFGRGPARKSDNTKYYDILGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSSFHNPFDIFESFFGGGFGGGGFGGGGPSRGRRQKQGEDVVHSLKVSLEDVFNGTTKKLSLSRNTLCAKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCPECKGTGEVISERDRCPQCKGNKISQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKGHPKFRRDHDDLHIEHTLSLTEALCGFQFNVTHLDGRQLLVKSNPGEVVKPGQHKAINDEGMPQHNRPFMRGRLYIKFNVEFPESGFLSPSQSLELEKILPQKTSKKLSQKELDDCEEATLHDVNIAEEMSRKKQQYRESYDDDDDEDEHSMPRVQCAQQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00052 427 SMART dnaj_3 13 67 IPR001623 -
Trre16g00052 427 Pfam DnaJ central domain 155 221 IPR001305 GO:0031072|GO:0051082
Trre16g00052 427 Coils Coil 394 414 - -
Trre16g00052 427 CDD DnaJ_zf 155 221 IPR001305 GO:0031072|GO:0051082
Trre16g00052 427 SUPERFAMILY HSP40/DnaJ peptide-binding domain 272 351 IPR008971 GO:0006457|GO:0051082
Trre16g00052 427 CDD DnaJ_C 126 352 - -
Trre16g00052 427 MobiDBLite consensus disorder prediction 386 427 - -
Trre16g00052 427 PRINTS DnaJ domain signature 16 34 IPR001623 -
Trre16g00052 427 PRINTS DnaJ domain signature 67 86 IPR001623 -
Trre16g00052 427 PRINTS DnaJ domain signature 47 67 IPR001623 -
Trre16g00052 427 Gene3D - 155 221 - -
Trre16g00052 427 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 406 IPR044713 GO:0006457|GO:0030544
Trre16g00052 427 MobiDBLite consensus disorder prediction 386 407 - -
Trre16g00052 427 ProSiteProfiles Zinc finger CR-type profile. 142 226 IPR001305 GO:0031072|GO:0051082
Trre16g00052 427 Hamap Chaperone protein DnaJ [dnaJ]. 11 380 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre16g00052 427 FunFam DnaJ subfamily A member 2 269 351 - -
Trre16g00052 427 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 152 223 IPR036410 -
Trre16g00052 427 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Trre16g00052 427 SUPERFAMILY Chaperone J-domain 10 115 IPR036869 -
Trre16g00052 427 FunFam DnaJ subfamily A member 2 155 221 - -
Trre16g00052 427 SUPERFAMILY HSP40/DnaJ peptide-binding domain 126 270 IPR008971 GO:0006457|GO:0051082
Trre16g00052 427 Pfam DnaJ domain 14 72 IPR001623 -
Trre16g00052 427 CDD DnaJ 15 64 IPR001623 -
Trre16g00052 427 Gene3D - 269 351 - -
Trre16g00052 427 FunFam Chaperone protein DNAj, putative 11 114 - -
Trre16g00052 427 Pfam DnaJ C terminal domain 129 350 IPR002939 -
Trre16g00052 427 Gene3D - 116 267 - -
Trre16g00052 427 Gene3D DnaJ domain 11 112 IPR036869 -
Trre16g00052 427 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00052 Trre-Chr16 370689 374103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00052 15 74 C2H2 Transcription Factor Family AT1G74250 44.928 8.79e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00052 K09503 - gmx:100800590 678.322