Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00051 ATGGAAAAACATATCAATATAGAAGAAAGTGATGCTTATGAAAATTTTGCTACATCCTCAACAACATCATCAACTTCATCAAACTCAGATACGTTCACCAAACACGACACAAAAAACTCTCCTTGCAAGAAGAGGAAGAGAAGTAGTGAAAGTGATGAAAATAATAGCAAACATCCAACTTATAGAGGAGTTAGGATGAGGAATTGGGGAAAATTTGTGTGCGAGATTCGCGAGCCGAAGAAAAAATCAAGAATATGGCTAGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAAGGTCATTCAGCATACCTTAATTTTCCTGAATTGGCAAAAGCACTTCCAAAGCCAATAAGTACTTCTCCAAAAGACATTCAAGCTGCAGCTGCAAAAGCAGCTAATAACACTTCATTGGAAGCTCATCAAGTTGAATCAAGACAAGAACATCAACATAATTCATCTTCAAGTTCAACATTTACTAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGAAAACAATGGACTTTGTTCATATTCTTCAAAAAATTCTTCTTGGTATTTATGTTCTGTTGATAGTGGATTTAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 663 0.3605 MEKHINIEESDAYENFATSSTTSSTSSNSDTFTKHDTKNSPCKKRKRSSESDENNSKHPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAKALPKPISTSPKDIQAAAAKAANNTSLEAHQVESRQEHQHNSSSSSTFTNDDATLFDLPDLFPDDENNGLCSYSSKNSSWYLCSVDSGFRLEEPSFWEKY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00051 220 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Trre16g00051 220 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Trre16g00051 220 MobiDBLite consensus disorder prediction 12 35 - -
Trre16g00051 220 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Trre16g00051 220 MobiDBLite consensus disorder prediction 43 60 - -
Trre16g00051 220 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 MobiDBLite consensus disorder prediction 149 171 - -
Trre16g00051 220 Pfam AP2 domain 59 110 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Trre16g00051 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 187 - -
Trre16g00051 220 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00051 Trre-Chr16 364743 365405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00051 44 216 AP2-EREBP Transcription Factor Family AT2G44940 51.643 2.92e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00051 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00051 - - gmx:100801129 224.942