Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00047 ATGAGAGGTTTAAACATGGAGTACTACCTGCCAATACTGGTTATGGTGTTAATACAGACTATATATGCAGGTTTGACTCTTGGGATAAGAATTGTACTCTTGGAAGGAATGAGCCCAATGGTATTTGTAGTGTACCGCTATGCTTTTGCAACCATTGTTCTTACTCCCATAGCTTATATATCAGGGAGAAATTCTGGCTCATATTCCTTAAATTTAAGCAGCTTTTCTTGGATATTTATCACCTCACTAGTTGGCATTACATTGGATCAAAATTTACTCGCTGAGGGTCTATATCTAGTTTCTTCTTCGGTTACAAGTGTCATGTGCAATGTCGTTCCAGCAGTTACATTTGTAATAGCAGCTTTTGTTGGAATGGAAAAAGGTCCTAAGTTGCTAAATGCAAAAAATGTTGTACCTCCAAAATCAATCATTGGCACAACCTTAGGAAGTGATGAGGATTGGTTGCTTGGATGTCTAATTCTTTTTGGAAGCTGTGTTGCTTGGTCAATTTGGCTCATTTTGCAGGTTCCAGCTTATGCAAGCCATCCTAATTCATTGTCACTTTCAGCCTGGATGTGTTTAATGGCGACATTGCAATCATCAGCAGTGACACTATTCATGAAGCCAGACCTGAATGCGTGGAAGATTAATTCTCTACTTCAATTTGGTTGCATTTTATATTCGGGAGTTATGGGATCTGCAGTAGCATTGTGTCTCCAAGCATGGTGCATTTCAAGGAGAGGACCTGTCTTCTCTGCTATGTTTACTCCTGTTTGTACAGTAATTGTGACTGTATTAGCTGCCTTGTTACTTCATGAGGAAATATACATTGGAAGCTTGATAGGTGGCATTGGAGTGATCATTGGTTTGTATATTGTGCTTTGGGGTAAAGCTGAAGATGTGGTTGATGTGAAAGAGAAGACAATTCCAAAATCTATGGTTAATGGGACAAAGGAAATTGTTGACAAGAAATCATGTGGAAAAGCATATTATAAATCTGATTTGGAAGAACCTCTTATCTCATGA 1026 0.386 MRGLNMEYYLPILVMVLIQTIYAGLTLGIRIVLLEGMSPMVFVVYRYAFATIVLTPIAYISGRNSGSYSLNLSSFSWIFITSLVGITLDQNLLAEGLYLVSSSVTSVMCNVVPAVTFVIAAFVGMEKGPKLLNAKNVVPPKSIIGTTLGSDEDWLLGCLILFGSCVAWSIWLILQVPAYASHPNSLSLSAWMCLMATLQSSAVTLFMKPDLNAWKINSLLQFGCILYSGVMGSAVALCLQAWCISRRGPVFSAMFTPVCTVIVTVLAALLLHEEIYIGSLIGGIGVIIGLYIVLWGKAEDVVDVKEKTIPKSMVNGTKEIVDKKSCGKAYYKSDLEEPLIS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00047 341 PANTHER WAT1-RELATED PROTEIN 10 300 IPR030184 GO:0016020|GO:0022857
Trre16g00047 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 191 297 - -
Trre16g00047 341 Pfam EamA-like transporter family 11 123 IPR000620 GO:0016020
Trre16g00047 341 Pfam EamA-like transporter family 156 294 IPR000620 GO:0016020
Trre16g00047 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00047 Trre-Chr16 345134 348914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00047 5 341 Nodulin-like Gene Family AT4G30420 46.825 8.33e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00047 - - gmx:100812331 383.645