Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00046 ATGAGAATGAGAGGTTTAAACATGGAGTACTACCTGCCAATACTGGTTATGGTGTTAATACAGACTATATATGCAGGTTTGACTCTTGGGATAAGAATTGTACTCTTGGAAGGAATGAGCCCAATGGTATTTGTAGTGTACCGCTATGCTTTTGCAACCATTGTTCTTACTCCCATAGCTTATATATCAGGGAGAAATTCTGGCTCATATTCCTTAAATTTAAGCAGCTTTTCTTGGATATTTATCACCTCACTAGTTGGCATTACATTGGATCAAAATTTACTCGCTGAGGGTCTATATCTAGTTTCTTCTTCGGTTACAAGTGTCATGTGCAATGTCGTTCCAGCAGTTACATTTGTAATAGCAGCTTTTGTTGGAATGGAAAAAGGTCCTAAGTTGCTAAATGCAAAAAATGTTGTACCTCCAAAATCAATCATTGGCACAACCTTAGGAAGTGATGAGGATTGGTTGCTTGGATGTCTAATTCTTTTTGGAAGCTGTGTTGCTTGGTCAATTTGGCTCATTTTGCAGGTTCCAGCTTATGCAAGCCATCCTAATTCATTGTCACTTTCAGCCTGGATGTGTTTAATGGCGACATTGCAATCATCAGCAGTGACACTATTCATGAAGCCAGACCTGAATGCGTGGAAGATTAATTCTCTACTTCAATTTGGTTGCATTTTATATTCGGGAGTTATGGGATCTGCAGTAGCATTGTGTCTCCAAGCATGGTGCATTTCAAGGAGAGGACCTGTCTTCTCTGCTATGTTTACTCCTGTTTGTACAGTAATTGTGACTGTATTAGCTGCCTTGTTACTTCATGAGGAAATATACATTGGAAGCTTGATAGGTGGCATTGGAGTGATCATTGGTTTGTATATTGTGCTTTGGGGTAAAGCTGAAGATGTGGTTGATGTGAAAGAGAAGACAATTCCAAAATCTATGGTTAATGGGACAAAGGAAATTGTTGACAAGAAATCATGTGGAAAAGCATATTATAAATCTGATTTGGAAGAACCTCTTATCTCATGA 1032 0.3857 MRMRGLNMEYYLPILVMVLIQTIYAGLTLGIRIVLLEGMSPMVFVVYRYAFATIVLTPIAYISGRNSGSYSLNLSSFSWIFITSLVGITLDQNLLAEGLYLVSSSVTSVMCNVVPAVTFVIAAFVGMEKGPKLLNAKNVVPPKSIIGTTLGSDEDWLLGCLILFGSCVAWSIWLILQVPAYASHPNSLSLSAWMCLMATLQSSAVTLFMKPDLNAWKINSLLQFGCILYSGVMGSAVALCLQAWCISRRGPVFSAMFTPVCTVIVTVLAALLLHEEIYIGSLIGGIGVIIGLYIVLWGKAEDVVDVKEKTIPKSMVNGTKEIVDKKSCGKAYYKSDLEEPLIS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00046 343 Pfam EamA-like transporter family 13 125 IPR000620 GO:0016020
Trre16g00046 343 Pfam EamA-like transporter family 158 296 IPR000620 GO:0016020
Trre16g00046 343 PANTHER WAT1-RELATED PROTEIN 12 302 IPR030184 GO:0016020|GO:0022857
Trre16g00046 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 126 - -
Trre16g00046 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 193 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00046 Trre-Chr16 345128 348914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00046 7 343 Nodulin-like Gene Family AT4G30420 46.825 9.05e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00046 - - gmx:100812331 383.645