Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00045 ATGCATAGTAGAAGATCCTCTGATGCTCCACTACACACTGGAGGGTCAATTTCCACAACTGAGCATTTTAAGAGAATGAAAAAAGACTCAAATGTGAGTCCAACCTGTTGGGCTCTGTTTCAAAGGACACACAAAGTAAAAGGTGATCCTTCAAAGTGGGTATCCACCAAATCTGAGAAGGTTGCGACTGATTATGAAAAAAGGATTCTAGAAAGGGACACACAAGAAACACCAAGAGATGATGTGTCTAGTCAAACTCTTGGCACAAGAATTGCACTTTTGGAGGGTATGAGCCCAAGGGTATTTGTAGTGTACCGTTGTGCTTTTGCAACCATTGCTCTTGCTCCTTTTGCTTATTTCTCAGGGAGAAACTCTGGCTCCTATTCCTTAAATTTAAGGAGTTTTTCGTTGATATTCTTGACCTCACTAATTGGCATTACAATGAATCAAAATTTATATTTTGAGGGTCTATATCTTGCTTCATCATCAGTTGCAAGTGCCATTTGCAATCTTCTTCCAGCAATCACATTTGTAATAGCAGTCTTAGTAGGAATGGAGAAAGTGAATATTCGAAGTTTGAGAACTATAGCCAAAATAGTGGGAACAATTATATGTGTAAGTGGAGCAGTGTGCATTGCATTATTGAAGGGTCCAAAGTTGGTAAATGCAGAAAACATACCTTCAAAATCAATCTTAGGTTTAGCCTCAGAAAGTGATGAGAATTGGTTGCTTGGATGTTTGTCTCTTCTCGGATGCATTGTTGCTTGGTCAATTTTTCTTATTTTGCAGGTTCCAGCTTATGCAAGTCATCCAAATTACTTATCACTTTCAGCTTGGATGTGTTTTATGGCAACATTACAATCAGCAGCAGTTACACTATTCTTAGAGCCAAACCTTAATGCATGGAAGATTAGTTCTCTACTTCAACTTGGTTGCTCTATATATGCAGGAGTTATGGGTTCTGCAGTAACATTTTGTCTTCAAACATGGTGCATTAAAAGGAGAGGACCTCTCTTCTATGCCATGTTTACTCCTGTTTTCACTTTAATTTGTACTGTATTGGCTGCTTTGTTACTTCATGAAGAAATATATATTGGAAGGTAA 1104 0.3804 MHSRRSSDAPLHTGGSISTTEHFKRMKKDSNVSPTCWALFQRTHKVKGDPSKWVSTKSEKVATDYEKRILERDTQETPRDDVSSQTLGTRIALLEGMSPRVFVVYRCAFATIALAPFAYFSGRNSGSYSLNLRSFSLIFLTSLIGITMNQNLYFEGLYLASSSVASAICNLLPAITFVIAVLVGMEKVNIRSLRTIAKIVGTIICVSGAVCIALLKGPKLVNAENIPSKSILGLASESDENWLLGCLSLLGCIVAWSIFLILQVPAYASHPNYLSLSAWMCFMATLQSAAVTLFLEPNLNAWKISSLLQLGCSIYAGVMGSAVTFCLQTWCIKRRGPLFYAMFTPVFTLICTVLAALLLHEEIYIGR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00045 367 PANTHER WAT1-RELATED PROTEIN 89 365 IPR030184 GO:0016020|GO:0022857
Trre16g00045 367 Pfam Plant transposase (Ptta/En/Spm family) 10 83 IPR004252 -
Trre16g00045 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 105 214 - -
Trre16g00045 367 Pfam EamA-like transporter family 244 364 IPR000620 GO:0016020
Trre16g00045 367 Pfam EamA-like transporter family 93 211 IPR000620 GO:0016020
Trre16g00045 367 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00045 Trre-Chr16 336816 342448 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00045 86 366 Nodulin-like Gene Family AT4G30420 54.895 5.18e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00045 - - gmx:100812331 406.371