Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00043 ATGAGAAGTTTAGACAGAGAGTACTACCTGCCAATAATGGTTATGGTGTTGATACAATTTATATATGCAGGTTTAAGTATTGGCACAAGAATTGCACTTGTGCAAGGTATGAGCCCCAGGGTATTTGTGGTGTATCGTCATGCTTTTGCAACCATTATTCTTGCTCCTCTTGCTTATTTATCATCAAGGAGAAACTCTATCTCTTATTCCTTAAATTTAAGGAGTTTTTCCTTGTTATTCTTGACCTCACTAATTGGCATTACATTGAATCAAAATTTATACTTTGAGGGTCTATATCTTGCTTCTTCTTCAGTTGCAAGTGCCATGGCCAATCTTGTTCCAGCAGTCACATTTGTAATAGCAGCCATTGTAGGAATGGAGAGAGTGAATATTCGAAGTATAAAAACTATAGCCAAAATAGTGGGAACAATAATATGTGTAAGTGGAGCAATGTCCATGGCATTGTTGAAGGGTCCAAAACTACTAAATGTACAAAACCTGCCTTCAAAATCAATCATGACTGGAAGTGATAATGAGAACTGGTTGCTTGGATGTTTGTGTCTTTTGGGAAATTGTGTTGCTTGGTCACTTTGGCTCATTTTGCAGGTTCCAGCTTATGCAAGCCATCCAAATTACTTATCACTTACAGCATGGATGTGTTTTATGGCAACATTACAATCATCAGCACTGACACTATTCTTGGAACGAAACCTCAATGCATGGAAGATTAATTCTATACTTCAATTTGGTTGCACTTTGTATTCAGGGATTATGGGATCTGCAGTAACATTCTCTCTACAAGCATGGTGTGTTACAAGGAGAGGACCTCTCTTCTCTGCTATGTTTAGTCCTCTTTTCACTTTGATTGTGACTTTATTGGCTGCCTTGTTGCTTCATGAGGAAATATACATTGGAAGCTTGATGGGTGCAATTGGAGTGATCATTGGCTTGTATATTGTGCTTTGGGGTAAAACTGAAGATATAGTTGATGTTAAAGAGAAGGTAGATCCCAAATCGATGGTTAATGCAACAGAGGAAATTCATTTTTTGAAAAGTAAATCTTGTGGAAAATCAAATTGTAAACTTGATTTGGAACAACCTCTTTTAGATGATGAATTTACAGTACACAATTGA 1134 0.3695 MRSLDREYYLPIMVMVLIQFIYAGLSIGTRIALVQGMSPRVFVVYRHAFATIILAPLAYLSSRRNSISYSLNLRSFSLLFLTSLIGITLNQNLYFEGLYLASSSVASAMANLVPAVTFVIAAIVGMERVNIRSIKTIAKIVGTIICVSGAMSMALLKGPKLLNVQNLPSKSIMTGSDNENWLLGCLCLLGNCVAWSLWLILQVPAYASHPNYLSLTAWMCFMATLQSSALTLFLERNLNAWKINSILQFGCTLYSGIMGSAVTFSLQAWCVTRRGPLFSAMFSPLFTLIVTLLAALLLHEEIYIGSLMGAIGVIIGLYIVLWGKTEDIVDVKEKVDPKSMVNATEEIHFLKSKSCGKSNCKLDLEQPLLDDEFTVHN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00043 377 PANTHER WAT1-RELATED PROTEIN 10 328 IPR030184 GO:0016020|GO:0022857
Trre16g00043 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 218 324 - -
Trre16g00043 377 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Trre16g00043 377 Pfam EamA-like transporter family 11 147 IPR000620 GO:0016020
Trre16g00043 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00043 Trre-Chr16 320015 322981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00043 7 372 Nodulin-like Gene Family AT4G30420 51.081 1.12e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00043 - - gmx:100812331 459.144