Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00035 ATGCACCACTCTTTCTTTGACCCACGCGCTTTCCATGGCGCGTCTTCAACTGGTTCTTACCCTCCACCACAACCTCAACCTCCTTCCATGCTCTCTCTCGATCCCCTCTCTGGTCATGGACATGGGTCTGGATTCCTTCTCGTGCCCAAGTCTGAGGATCTTAATAGGCCCATGGACTTTGTTGGCTCCAGAATTGGACTCAACCTTGGCGGCCGCACTTACTTCTCGTCTTCTGAAGACGATTTTGTGAGCCGCCTTTATCGTCGGTCTAGACAGCCTGAACCGGGTTCATTGGGTTCGTCGAACTCCCCGAGGTGTCAGGCTGAAGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCCGCCACCGTCATCGCTGCTGGGTTGACTCAACGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCAGGAGAAAAACTCAGCACCCAAATACTCAAGATATTAACAAATCTCACAACACTTCGGAAAATGCTGCTACAAGGTCCCCGCCAGAGTCGGGAACTCAATCTTCATCGTCGGTGACGGTGGCCGTTTCTCCGCCGGATTATTTTCGACAAAGGTCCTACCAAAGCCAAAGTCCTTCAACAACATCAAGCTCATTGTTTTTCTCCAGCGGGTAG 741 0.5101 MHHSFFDPRAFHGASSTGSYPPPQPQPPSMLSLDPLSGHGHGSGFLLVPKSEDLNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSLGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDINKSHNTSENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSQSPSTTSSSLFFSSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00035 246 MobiDBLite consensus disorder prediction 11 36 - -
Trre16g00035 246 SUPERFAMILY SBT domain 104 183 IPR036893 GO:0003677|GO:0005634
Trre16g00035 246 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 237 IPR044817 GO:0003677
Trre16g00035 246 MobiDBLite consensus disorder prediction 186 246 - -
Trre16g00035 246 MobiDBLite consensus disorder prediction 170 246 - -
Trre16g00035 246 Gene3D - 96 167 IPR036893 GO:0003677|GO:0005634
Trre16g00035 246 Pfam SBP domain 106 179 IPR004333 GO:0003677
Trre16g00035 246 FunFam Squamosa promoter-binding-like protein 14 97 167 - -
Trre16g00035 246 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00035 Trre-Chr16 263556 265380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00035 12 153 SBP-box Gene Family AT1G02065 61.111 5.18e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre16g00035 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00035 - - gmx:100802206 332.028