Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00034 ATGTTGGACTATGAATGGGGTAACCCATCCAACATCATGCTTACAGGAAATGAAGACAACTCCTCCTCCGCCGCAGCTTCCGATCAAGCCCAACGCCAAATCTTCGACCACTATGCTTCTCAAGCCATGTTGTCTGACAATTACCTAAACGGACCTGGGCCACCCATGAACACAAACACTAGTGATTTTACCCACCATCAGCAGCAGCAGCATCATCACTTTAACCCACAAGCCCAACAACAGCATCATATGCACCACTCTTTCTTTGACCCACGCGCTTTCCATGGCGCGTCTTCAACTGGTTCTTACCCTCCACCACAACCTCAACCTCCTTCCATGCTCTCTCTCGATCCCCTCTCTGGTCATGGACATGGGTCTGGATTCCTTCTCGTGCCCAAGTCTGAGGATCTTAATAGGCCCATGGACTTTGTTGGCTCCAGAATTGGACTCAACCTTGGCGGCCGCACTTACTTCTCGTCTTCTGAAGACGATTTTGTGAGCCGCCTTTATCGTCGGTCTAGACAGCCTGAACCGGGTTCATTGGGTTCGTCGAACTCCCCGAGGTGTCAGGCTGAAGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCCGCCACCGTCATCGCTGCTGGGTTGACTCAACGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCAGGAGAAAAACTCAGCACCCAAATACTCAAGATATTAACAAATCTCACAACACTTCGGAAAATGCTGCTACAAGGTCCCCGCCAGAGTCGGGAACTCAATCTTCATCGTCGGTGACGGTGGCCGTTTCTCCGCCGGATTATTTTCGACAAAGGTCCTACCAAAGCCAAAGTCCTTCAACAACATCAAGCTCATTGTTTTTCTCCAGCGGGTAG 990 0.503 MLDYEWGNPSNIMLTGNEDNSSSAAASDQAQRQIFDHYASQAMLSDNYLNGPGPPMNTNTSDFTHHQQQQHHHFNPQAQQQHHMHHSFFDPRAFHGASSTGSYPPPQPQPPSMLSLDPLSGHGHGSGFLLVPKSEDLNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSLGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDINKSHNTSENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSQSPSTTSSSLFFSSG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00034 329 MobiDBLite consensus disorder prediction 50 84 - -
Trre16g00034 329 SUPERFAMILY SBT domain 187 266 IPR036893 GO:0003677|GO:0005634
Trre16g00034 329 ProSiteProfiles Zinc finger SBP-type profile. 186 263 IPR004333 GO:0003677
Trre16g00034 329 MobiDBLite consensus disorder prediction 269 329 - -
Trre16g00034 329 Pfam SBP domain 189 262 IPR004333 GO:0003677
Trre16g00034 329 MobiDBLite consensus disorder prediction 50 120 - -
Trre16g00034 329 MobiDBLite consensus disorder prediction 253 329 - -
Trre16g00034 329 MobiDBLite consensus disorder prediction 10 30 - -
Trre16g00034 329 SUPERFAMILY beta-sandwich domain of Sec23/24 48 308 - -
Trre16g00034 329 Gene3D - 179 250 IPR036893 GO:0003677|GO:0005634
Trre16g00034 329 FunFam Squamosa promoter-binding-like protein 14 180 250 - -
Trre16g00034 329 MobiDBLite consensus disorder prediction 1 30 - -
Trre16g00034 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 26 319 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00034 Trre-Chr16 263556 265629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00034 1 236 SBP-box Gene Family AT1G02065 47.600 5.61e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre16g00034 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00034 - - lja:Lj3g3v0499510.1 407.527