Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00018 ATGGAGGAGCTAGTGAGAGGGCGTGAGTATGCCAACAAGCTTGGACAAGTACTAGCAGTCATGAAGATTAATAATCATGATGATGAGTTGGCAGCAGCAGCAGCAACAGCAACCCCATTATTTGCCCAACATCTTGTCAACAACATTCTCAACTCATTTACCAATACCCTCTTCCTTTTAAAAAAAAATCAGATGCAACTAAAAAGGGACTTTTCCTTCATTAGTCCAACTAAATCTGAGGACAACACCCAAGATACTTCCACCGGTGCTGCTGCTGGTGGTAGAGGATCTTACAAAAGAAGAAAAACTACAGAGACATGGGAGAAAATTTCAGAAAGTCCAATAGATGATGGGCATCAGTGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATATTCAAGGGACTACTACAGGTGCACTCACAAATTAGATCAAAGATGCGAAGCAACGAAACAAGTGCAGAGAGTTGAAGAGAAGCCTGCCTCATATAAAACCACCTATTATGGTCACCACACTTGCAAAAACACAGATGAAATTATATTTGAACCTACTTCTCCTCCTCCTCCTCCTCCTAATTATTCTTCCTCCATATTGCTTAGCTTTACCAACGCATTCCCAACTCCAAACGAACAAGATTGTCCCTTTTTATCCTCACATAATTCAGTATTGGATTATTGTAAGGAAGAGGAAGTTTTAATTCCCTCACCATCATCCGAGGATGAATTCTCGTTCTCCCCATTAAATAGTACTTTCTCATCATCATCATCATCATCATCAACATCATCATCATCATCATCATCATCATCATCAACTTCTAAACTTGATCAATCCGATGATGATGACCATGACCATAAGGATATGATGATGATGATGTATGGTCTCTTGTATGATTCTATTGATCAGCTTGACCATCATGATCATTTCTTTCACCCTTTTCTTGGCCTTTTATAG 957 0.3918 MEELVRGREYANKLGQVLAVMKINNHDDELAAAAATATPLFAQHLVNNILNSFTNTLFLLKKNQMQLKRDFSFISPTKSEDNTQDTSTGAAAGGRGSYKRRKTTETWEKISESPIDDGHQWRKYGQKTILNSKYSRDYYRCTHKLDQRCEATKQVQRVEEKPASYKTTYYGHHTCKNTDEIIFEPTSPPPPPPNYSSSILLSFTNAFPTPNEQDCPFLSSHNSVLDYCKEEEVLIPSPSSEDEFSFSPLNSTFSSSSSSSSTSSSSSSSSSSTSKLDQSDDDDHDHKDMMMMMYGLLYDSIDQLDHHDHFFHPFLGLL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00018 318 MobiDBLite consensus disorder prediction 76 105 - -
Trre16g00018 318 MobiDBLite consensus disorder prediction 254 275 - -
Trre16g00018 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 233 IPR044810 GO:0003700
Trre16g00018 318 Gene3D WRKY domain 101 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g00018 318 ProSiteProfiles WRKY domain profile. 110 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00018 318 Pfam WRKY DNA -binding domain 116 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00018 318 MobiDBLite consensus disorder prediction 254 284 - -
Trre16g00018 318 SMART WRKY_cls 115 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00018 318 MobiDBLite consensus disorder prediction 76 91 - -
Trre16g00018 318 SUPERFAMILY WRKY DNA-binding domain 111 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00018 Trre-Chr16 134698 136485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00018 1 180 WRKY Transcription Factor Family AT3G56400 35.602 1.47e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g00018 WRKY 1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00018 - - tpra:123884205 382.489