Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00017 ATGGATCATGATAGAGATCATGAGGCAATGGAGGAGCTAGTGAGAGGGCGTGAGTATGCCAACAAGCTTGGACAAGTACTAGCAGTCATGAAGATTAATAATCATGATGATGAGTTGGCAGCAGCAGCAGCAACAGCAACCCCATTATTTGCCCAACATCTTGTCAACAACATTCTCAACTCATTTACCAATACCCTCTTCCTTTTAAAAAAAAATCAGATGCAACTAAAAAGGGACTTTTCCTTCATTAGTCCAACTAAATCTGAGGACAACACCCAAGATACTTCCACCGGTGCTGCTGCTGGTGGTAGAGGATCTTACAAAAGAAGAAAAACTACAGAGACATGGGAGAAAATTTCAGAAAGTCCAATAGATGATGGGCATCAGTGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATATTCAAGGGACTACTACAGGTGCACTCACAAATTAGATCAAAGATGCGAAGCAACGAAACAAGTGCAGAGAGTTGAAGAGAAGCCTGCCTCATATAAAACCACCTATTATGGTCACCACACTTGCAAAAACACAGATGAAATTATATTTGAACCTACTTCTCCTCCTCCTCCTCCTCCTAATTATTCTTCCTCCATATTGCTTAGCTTTACCAACGCATTCCCAACTCCAAACGAACAAGATTGTCCCTTTTTATCCTCACATAATTCAGTATTGGATTATTGTAAGGAAGAGGAAGTTTTAATTCCCTCACCATCATCCGAGGATGAATTCTCGTTCTCCCCATTAAATAGTACTTTCTCATCATCATCATCATCATCATCAACATCATCATCATCATCATCATCATCATCATCAACTTCTAAACTTGATCAATCCGATGATGATGACCATGACCATAAGGATATGATGATGATGATGTATGGTCTCTTGTATGATTCTATTGATCAGCTTGACCATCATGATCATTTCTTTCACCCTTTTCTTGGCCTTTTATAG 984 0.3923 MDHDRDHEAMEELVRGREYANKLGQVLAVMKINNHDDELAAAAATATPLFAQHLVNNILNSFTNTLFLLKKNQMQLKRDFSFISPTKSEDNTQDTSTGAAAGGRGSYKRRKTTETWEKISESPIDDGHQWRKYGQKTILNSKYSRDYYRCTHKLDQRCEATKQVQRVEEKPASYKTTYYGHHTCKNTDEIIFEPTSPPPPPPNYSSSILLSFTNAFPTPNEQDCPFLSSHNSVLDYCKEEEVLIPSPSSEDEFSFSPLNSTFSSSSSSSSTSSSSSSSSSSTSKLDQSDDDDHDHKDMMMMMYGLLYDSIDQLDHHDHFFHPFLGLL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00017 327 MobiDBLite consensus disorder prediction 85 100 - -
Trre16g00017 327 SUPERFAMILY WRKY DNA-binding domain 120 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g00017 327 ProSiteProfiles WRKY domain profile. 119 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00017 327 SMART WRKY_cls 124 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00017 327 MobiDBLite consensus disorder prediction 263 284 - -
Trre16g00017 327 MobiDBLite consensus disorder prediction 85 114 - -
Trre16g00017 327 Pfam WRKY DNA -binding domain 125 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g00017 327 Gene3D WRKY domain 110 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g00017 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 259 IPR044810 GO:0003700
Trre16g00017 327 MobiDBLite consensus disorder prediction 263 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00017 Trre-Chr16 134671 136485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00017 8 189 WRKY Transcription Factor Family AT3G56400 35.233 9.20e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g00017 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00017 - - tpra:123884205 385.956