Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00016 ATGGCTGCTTCTTTGCTCCATCCAACTGCTATCACTACACTTAAGCAGCAGCAGCAGCACCACCACCGAACATCAACCATTCCACCGCACAATGTTTCTTTCTTAACTAATAACACTAACCGTTGTTTCAATACAACAACAAAGTGTAATGCATTCTTTGATAACAACAATGTGCTCAACGGTTTGTTGGATGTTGGTGGGGACAACTTTCCTTCTTTCCTCCGATCAGGACTGCTTCAGTTTGAAGACTTATCAGACATGCAGAGATGGGAGTCTCTTGTGTTTGGAAGTCTCGTATGGATTTACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCTTTGATGCTTACCTTCTTGCTCCTCTTCAACTTGCTTTTGACAATCTATCTGGTAGGAGAAACTTGAAGACCGCTGATTTTCTTGTTGGAAATAGAATCGGTGAAGGTTCCTTTGGTGTTGTTTATTCTGGTGTTTTACTCCCTAAAAGTGTCATGCTGGATGCAGAGGTCACCAACAAGGTAACAACAACAAGGTTGGATCCCAAATCTAAGGATAAAGTCATTCTCAAAAAGGTTAAGGTTGGGATTAAAGGGGCTGAAGAATTTGGTGAATTTGAGGAGTGGTTCAATTACAGACTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTTGCTGATAAAACTAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCTTACTCTTGCCGATTACATCAAAGACCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGTGTCGATTCTTCTAGACGAAATGCATTGATTATCAAGCAAATTCTGCGCCAGATAATCACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCATAGAGATATAAAGCCAGCCAACTTAGTTGTTACTAAAAAGGGGCAGATTAAACTCATCGATTTCGGTGCAGCGACAGACCTTCGGATCGGAAAGAATTATGTTCCCGACCGCACCCTTTTGGATCCAGACTATTGCCCCCCAGAACTATATGTACTCCCAGAAGAAACACCGAGTCCTCCACCAGCACCGATTGCTGCGTTCTTTTCACCAATACTATGGCAGTTAAACAGCCCAGATCTTTTTGATATGTATTCTGCTGGGATTGTACTCCTACAAATGGCAATACCAACCTTAAGGTCGCCCGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACATGTGGTTATGATTTAAAAAAATGGAGGGAGTTTACTCGACTCAGGCCCGACTTCCAAATTCTTGACAGTGAATCTGGTAGAGGTTGGGACTTGGCAACAAAGCTTATCTCTGAGAGAGGTCCCTTAAGAAGAGGACGTTTATCTGCTGCTTCGGCTTTGAGACATCCTTATTTTCTTCTTGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTACGCTCAAGTAGAAAGTGA 1503 0.4192 MAASLLHPTAITTLKQQQQHHHRTSTIPPHNVSFLTNNTNRCFNTTTKCNAFFDNNNVLNGLLDVGGDNFPSFLRSGLLQFEDLSDMQRWESLVFGSLVWIYLTARPGVLIGAFDAYLLAPLQLAFDNLSGRRNLKTADFLVGNRIGEGSFGVVYSGVLLPKSVMLDAEVTNKVTTTRLDPKSKDKVILKKVKVGIKGAEEFGEFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLADYIKDRNFPSNLESVMFGRVLQGVDSSRRNALIIKQILRQIITSLKKIHDTGIVHRDIKPANLVVTKKGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREFTRLRPDFQILDSESGRGWDLATKLISERGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLRSSRK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00016 500 SUPERFAMILY Protein kinase-like (PK-like) 136 482 IPR011009 -
Trre16g00016 500 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 30 500 - -
Trre16g00016 500 Pfam Protein kinase domain 288 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00016 500 Gene3D Transferase(Phosphotransferase) domain 1 279 483 - -
Trre16g00016 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Trre16g00016 500 Gene3D Phosphorylase Kinase; domain 1 128 248 - -
Trre16g00016 500 SMART serkin_6 140 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00016 500 ProSiteProfiles Protein kinase domain profile. 140 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00016 Trre-Chr16 112157 114053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00016 136 337 MAP Kinase Kinase Kinase AT3G13530 27.053 1.93e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trre16g00016 Pkinase 3.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00016 - - psat:127120955 740.339