Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00001 ATGGAAGGATTGGATGGATTAATAGAGAAGCTTTTGGAAGCAAGGAATAATAGGGGCAAGCGGATTCAACTAGTGGAGTCAGAAATTCGCAATCTTTGCACCAAAGCAAAAGAAGTTTTCCTCAACCAGCCAAACCTACTTGAATTAGAGGCTCCAATTAACATTTGTGGCGATATACACGGGCAATATCCGGACCTATTGTGTCTATTTGAATATGGTGGGTTTCCTCCAGATTCGAATTACCTATTTCTTGGGGATTACGTAGATAGAGGAAAGCAAAGTATAGAAACAATATGCCTCCTACTCTCATATAAGATCAAATTTCCAGAGAAGTTTTTCCTTCTTAGAGGAAACCACGAATGTGCATCTATTAATAGAATTTATGGCTTTTATGATGAGTGCAAGCGAAGATTCAGCGTTCGCTTATGGAAGGTATTTACAGATTGCTTCAATTGTTTGCCTGTAGCTGCAGTGATTGATGATAAAATTCTATGCATGCACGGCGGGCTTTCTCCCGATATGGAGAGCTTGAATCAAATCAAAGCTATAGAAAGGCCATTGGATGTTCCAGATCAGGGCCTCTTATGTGACCTCCTTTGGGCTGATCCAGACACAGAAATTAAAGGGTGGGGAGAGAATGATCGTGGTGTTTCCTACACGTTTGGACCAGACAAGGTAGATGAGTTCTTGAAGAAACATGATCTTGATCTTATATGTCGGGCTCATCAGGTTGTTGAAGATGGCTACCAATTCTTTGCAGACAGACAACTAGTTACAATATTTTCAGCACCAAATTATTGTGGAGAGTTCAATAATGCAGGTGCACTTATGTGCGTCGATGAAACTTTACTTTGTTCATTCCAAATTCTCAAACCCATGAGAGGAAAGTAA 891 0.4029 MEGLDGLIEKLLEARNNRGKRIQLVESEIRNLCTKAKEVFLNQPNLLELEAPINICGDIHGQYPDLLCLFEYGGFPPDSNYLFLGDYVDRGKQSIETICLLLSYKIKFPEKFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDCFNCLPVAAVIDDKILCMHGGLSPDMESLNQIKAIERPLDVPDQGLLCDLLWADPDTEIKGWGENDRGVSYTFGPDKVDEFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQILKPMRGK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Trre16g00001 296 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Trre16g00001 296 Pfam Calcineurin-like phosphoesterase 53 244 IPR004843 GO:0016787
Trre16g00001 296 SUPERFAMILY Metallo-dependent phosphatases 20 293 IPR029052 -
Trre16g00001 296 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 17 294 - -
Trre16g00001 296 SMART pp2a_7 24 294 IPR006186 GO:0016787
Trre16g00001 296 FunFam Serine/threonine-protein phosphatase 1 295 - -
Trre16g00001 296 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Trre16g00001 296 Gene3D - 2 296 IPR029052 -
Trre16g00001 296 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Trre16g00001 296 CDD MPP_PP1_PPKL 4 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00001 Trre-Chr16 14179 15333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00001 53 240 Calmodulin-binding Proteins AT5G63870 32.735 3.22e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00001 K06269 - gmx:100804212 573.933