Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05681 ATGGATGAGGAAAAGGACGTGGAGCAGATGATACCAAAATCAATATCATCATCGTCGTCGTCTACGGCTGGATCAGCCAGATCTGGGCTTATAGAGCCTCTGCTTGTCAATAACAACAGACTCAATACTACTTCCCAACTTGCCATTGTTGGAGCCAAAGTTTGTCCGATTGAAAGTCTCGACTACGAGATCATTGAGAATGATTTATTCAAGCAAGACTGGAGGTCTAGAGGAAAGACTGAAAATGCGCAGTATATGATTCTGAAATGGACCATTGCACTTCTTATTGGTTTAGGCACAGGCCTTGTTGCCTTCTTCAACAACATTGGAGTTGAGAATATTGCCGGTTTCAAGCTTCTTCTCACCAACGATCTCATGCTTAACCACAAGTATTATAAGGCCTTCGCAGTCTATGCTAGTTGTAATATGGTTTTAGCCATTGCTGCAGCATCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCCGGCATACCTGAGGTCAAGTCATATCTCAACGGCGTAGACGCTCCTTCTATATTGGCTCCAACCACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTTGCAGCTGGTTTTGTTGTGGGTAAAGAAGGACCTATGGTGCATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTGAAAAATATGGACTAACTTGGAAAGGATTCAGATATTTTAAAAATGACAGAGATCGAAGGGATTTTATCACATGTGGTGCAGCTGCTGGTGTTGCCGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCCCTTTTGTGGCGAACATTTTTTACTACAGCTGTAGTGGCTGTAGTATTGAGAGGTTTCATGGAATATTGCAAAGGTGAAAACTGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTCAATTCAGTAAAGCCTGCATATAGCATACCTGACTTACTGGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTATAATTATCTCGTGGATAAGGTCCTTCGCACTTACAGCATCATTAATGAGAAAGGTCCTATATTTAAAATAATACTTGTGATGATTGTGTCGTTTTTGACTTCTTGTTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCTTCTCATGTGGGGGATCAATGCCCAACTGTAGGGCGCTCTGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCTTCTCTCTTTTTTACTACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCTCTGACAAAAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTGGCAATCTACTTCCTCGGAATCATCACTTACGGCATTGCAATTCCATCAGGGCTCTTTATTCCGGTGATACTTGCAGGGGCCTCATATGGTCGTGTTGCAGGAAGTTTGTTAAGTCCATTCACAGTTCTGGATGTGGGCTTGTTTGCACTATTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTTTCTCTTTGTGTTATACTTCTTGAACTCACTAACAACCTTCTCATGCTACCATTGGTCATGTTGGTTCTCCTTATTTCAAAGTCTGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATAGTTGAAATGAAGGGGTTGCCTTATTTGGAAGCGCACGCAGAACCGTACATGAGGCAGTTAGTTGCGGGTGATGTTGTTTCTTGTCCATTGTTTACATTCTCTAAGATTGAAAAAGTGGGGAATATTGTGCACACTTTAAAGGTGACACGACATAATGGGTTCCCTGTAATTGACGAGCCCCCATTATCAGATGCACCAGAGTTGTGTGGGTTGGTTTTGAGGTCACATCTGCTTGTAATTCTTAAACACAAGGCATTTGCGACGATGCAAGAGGGGATGCCCTTGATTATGAATAAGTTGAGGCCACATGATTTTGGAAAGCCGGGTTCGGGGAAGGGGATAAGGCTGGATGATTTAGAGATATCAGAGGAGGAGATGGAAATGTATGTTGATTTGCATCCTATTACCAACAGGTCACCATATACAGTTATGGAGACATTGTCTCTAGCTAAAACAGCCGTTCTTTTCCGCGAGCTTGGCCTCAGGCACTTGTTGGTTCTCCCAAAGACACCTGGAAGGCTTCCCATTGTGGGGATCATGACTAGGCACGACTTCATGCCCGAACATATATTGGGACTATACCCTCACTGCAATCCCTACAAGTAA 2316 0.4352 MDEEKDVEQMIPKSISSSSSSTAGSARSGLIEPLLVNNNRLNTTSQLAIVGAKVCPIESLDYEIIENDLFKQDWRSRGKTENAQYMILKWTIALLIGLGTGLVAFFNNIGVENIAGFKLLLTNDLMLNHKYYKAFAVYASCNMVLAIAAASLCAYIAPAAAGSGIPEVKSYLNGVDAPSILAPTTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEYCKGENCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINEKGPIFKIILVMIVSFLTSCCSFGVPWLSKCIPCPSHVGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVAGDVVSCPLFTFSKIEKVGNIVHTLKVTRHNGFPVIDEPPLSDAPELCGLVLRSHLLVILKHKAFATMQEGMPLIMNKLRPHDFGKPGSGKGIRLDDLEISEEEMEMYVDLHPITNRSPYTVMETLSLAKTAVLFRELGLRHLLVLPKTPGRLPIVGIMTRHDFMPEHILGLYPHCNPYK 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05681 771 FunFam Chloride channel ClC3 81 396 - -
Trre15g05681 771 PRINTS Plant CLC chloride channel signature 274 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre15g05681 771 PRINTS Plant CLC chloride channel signature 430 446 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre15g05681 771 PRINTS Plant CLC chloride channel signature 306 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre15g05681 771 PRINTS Plant CLC chloride channel signature 63 71 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre15g05681 771 PRINTS Plant CLC chloride channel signature 288 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre15g05681 771 SUPERFAMILY CBS-domain pair 583 756 IPR046342 -
Trre15g05681 771 CDD ClC_6_like 58 579 - -
Trre15g05681 771 Gene3D Clc chloride channel 81 578 - -
Trre15g05681 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 761 - -
Trre15g05681 771 Pfam Voltage gated chloride channel 147 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 CDD CBS_pair_voltage-gated_CLC_euk_bac 582 758 - -
Trre15g05681 771 MobiDBLite consensus disorder prediction 11 25 - -
Trre15g05681 771 PRINTS Chloride channel signature 189 208 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 510 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 566 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 528 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 478 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 PRINTS Chloride channel signature 158 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre15g05681 771 Gene3D - 579 762 IPR046342 -
Trre15g05681 771 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g05681 771 SUPERFAMILY Clc chloride channel 67 582 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05681 Trre-Chr15 65079242 65082680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05681 29 771 Ion Channels AT5G49890 75.839 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05681 K05016 - jre:108988922 1140.18