Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05673 ATGGAACTTTCTAGTAACCAAGATGGGGAAATCCCAATCCCCATAAATAATTATGGTGGTGGTGGTGGTGGTGGTTCTAATGGACATGCTCATCACATGCTTCATAACCATCATCATCATCATGTTCATGATCACCCTACTCCTACTCCTCATCCTCCTCCACTACACCATAACCATAATCACAGTAATATTATATCATCTTCCTCAACTCCAACAGCAGCAGCAGCAGTGCCAGTGGCAGTAGTACCCCAAAACCCTTCAATTAATGGCACTACCCCCACCACCACCACCTCTATGCAAGCTGTGAGTGGTGTGGAATTAGATCATGATCACTCCTCCTACAAGAAATCATCATCAGTGGTGGTGAGGTACAGAGAATGTCTTAAAAACCATGCAGCTGCAATGGGAGGGAATGCCACGGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTACTATTGAGGCACTCAACTGCTCTGCCTGTCATTGCCATAGAAACTTCCACAGAAAAGAGGTTGAAGGTGAAACTGATCAGGAAGACAGCTACCACCACCACCACCATAACTCCTCCTCCGCCTTCAACTTCAACTTCAACAGGCAGCAGCACCACCACCATAGCATGAGGAAATTCATGTTACCTCTTCCTGATCTTGGCTACCATCACCCTACTCCTAATACTGCATCAGCAGCAACTGGTAACAACAACATTCTTCCTTCTAGAGCTGTGCCACCACCCCCACATGGACATGGCCACATTATTATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGATCAGGCAGCTGCTAGACCACCTACTCAGCAACAGCAGCAACAGGTGGTGATGAAGAAAAGGTTCAGAACAAAGTTCACACAGGAGCAGAAAGACAAAATGTTCAACTTTGCTGAGAAAGTTGGGTGGAAATTTCAGAAGCAGGAGGAATCTCTGGTGCAACAGTTCTGCCAAGAAATTGGAGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAATTACAAGATGAACTTACTACTGCTAATCATCTCCCAACTCCTTAA 1101 0.4496 MELSSNQDGEIPIPINNYGGGGGGGSNGHAHHMLHNHHHHHVHDHPTPTPHPPPLHHNHNHSNIISSSSTPTAAAAVPVAVVPQNPSINGTTPTTTTSMQAVSGVELDHDHSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVEGETDQEDSYHHHHHNSSSAFNFNFNRQQHHHHSMRKFMLPLPDLGYHHPTPNTASAATGNNNILPSRAVPPPPHGHGHIIMPFNYNIPSESDEQEDQAAARPPTQQQQQQVVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESLVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQDELTTANHLPTP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05673 366 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 124 173 IPR006456 -
Trre15g05673 366 FunFam Zinc-finger homeodomain protein 2 277 350 - -
Trre15g05673 366 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 123 174 IPR006456 -
Trre15g05673 366 MobiDBLite consensus disorder prediction 31 45 - -
Trre15g05673 366 Pfam ZF-HD protein dimerisation region 122 174 IPR006456 -
Trre15g05673 366 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 100 348 - -
Trre15g05673 366 MobiDBLite consensus disorder prediction 262 286 - -
Trre15g05673 366 SUPERFAMILY Homeodomain-like 282 350 IPR009057 -
Trre15g05673 366 Gene3D - 274 351 - -
Trre15g05673 366 NCBIfam homeobox domain, ZF-HD class 289 345 IPR006455 -
Trre15g05673 366 MobiDBLite consensus disorder prediction 242 286 - -
Trre15g05673 366 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05673 Trre-Chr15 64954265 64955365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05673 112 351 ZF-HD Transcription Factor Family AT2G02540 47.012 6.62e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre15g05673 ZF-HD_dimer 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05673 - - tpra:123910799 485.337