Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05669 ATGAATGATCCAAGCAGCCTCCACTTGAAGAAGGAACTCACTCAAATTCGAAAGGCTTCTCGTGTATTGAGGGATCCCGGCACTACCTCTTCCTGGAAATCAACCACCTCCAGATCTGCTGCTCCATTCAGAAATAATCATCATCATCATCTTCCTTCTCCTTCTGCAAATAGCAACAACAGAAAAGTCTTCTTATACAACTGGAACAACTACAAATCATCACCATCCTTCAGCCACCATCAACAACTTGAAGAGGAAGACCACTCTTCTTCCTCCCTTCTTGCAAGTTTAGAAGAACACGGTTTCAGCGACGCTCCCAATGTTCTTGATTCTAAGAGTGACGCTGGGACCCGCTCTTCCTTTTTCCCTAATTCAACAATTCCTCTTCATCATCATCTTAATAATAATAATAATAAGAAGAAGAAAAAAAAGAACAAGCCATTGCTCTTACCACGCCATTCAAACGATCATCATCATCACTCCGACCAGGACGATGATTACTCTAACTCCGTTTCCGGTGCTTCTTCTCTTCTTCTCAAACTCAAAAACCACAACAACTCCTCCAACTTCATCACAACAAGAAGAAGAATAAGAAGCTCCAAAGACGATGATTCTTCTTATACCTATAGTACTCCTGCATTGTCGGCCACCTCTTTCAACAGGTACCGTCGCCGTTATCCCAGCACCGTTGGATCCTTTGACGGCACAACTACCTCCATGAATGACGGTGATGACGAGATTGATGACGATCACTTGGATCTGCCTGGTCGTCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGAACGCCCAGAAATAGAGTTGCCGGCTGTGGTAGTTGTTGTTCTCCTTCCCTCTCTGACACTTTGAGAAGGAAAGGTAGCACCATTCTCTGTGGAACTCAATCTATGTATTCCAGACACTGCAGATCCTCTTCTTCCACTTCACTTCCTCACAAGCGGAGAATGTCTTTGAGGAATGCTCAAAGGGGAGGAGGAGAAAGAGGTGTTGTTCCTCTCCTCACTAGCACCAGCAGCGGTGATGTTAGACAAGGCTCCTCCTCTATTGGAATTGGTAGGAGTAGGACCGATGATGAACTTTCTACTAACTTTGGTGAACTTGATCTTGAGGGATTGAGCAGACTTGACGGAAGAAGGTGGTCCTCCAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTCCCTCTCCATGAGGATGAAGAAGGCTCCTCCGATAACGGTAGGAGTTTCAGCCATAAATATAAGCCTTTGTTCTTTGGTGAACTCATTGGTCAGAATATTGTGGTTCACTCCCTAGTCAATACTGTTTCCAGGGGCAGAATTGCTCCTGTCTATCTTTTCCAAGGTCCCCGTGGGACTGGCAAAACATCTACTGCTAGGATATTCGCCGCTGCCTTGAACTGTGTGGCTTCTGATGAAGGCAAACCTTGTGGATACTGCAGGGAATGCGCTGATTACGTTTCTGGCAAGAGCCTTGATCTGGTGGAAATTGATGGAACTAGTAAGAAAGGAATTGATAAAGCTAGATATCTTTTGAAAAGATTGTCGGTTGTGTCTTCTGCGGCGGCATCCTCGCGATATACTGTTTTTGTTATTGACGAGTGTCACCTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCGCCCCAGCGAGTTGTATTCATATTTATAACATCCGATCTTGACAATGTGCCACGAACAATACAGTCTCGATGTCAGAAGTACCTTTTCAATAAAATTAAAGATGGGGATATTGTGACCAGGTTAAGGAAAATATGTACTCAGGAGAACCTAGACGTGGAAACAGATGCACTGGACCTTATTGCTATGAATGCAGACGGTTCACTTCGGGATGCAGAGACAATGTTAGAGCAGCTTAGTTTGCTGGGGAAAAGAATCACTACATCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAGTTAGCAATGTCAGCAGACACTGCAGAGACGGTGAAAAGGTCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGGCTTATTATGGACATCATTGCTGGATCATATGCAGTGGTTGATACCAAATCCGACGGTTCATTCGTCGGTGGTCGGAGTTTGAATGAAACGGAGCTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTTTACAGCTTGGTTCCGTACCTTCTTCAGATCATACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGGTTCAAGAGACATTTCTTCTTTCAAGCACAAATCAGACCTCCAATATATGTCTCAAAAGTCAACACCCGCTGCTTCCCACCTAAAAGCAGTAAATGACAGTTCCAGCCTTCAAATGGATATGCCCTCAAAAATTGATGGTTTCATCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAGATGATGGCTCTACAGTGGTCTCATTGGATGATCTTATTGTTGGGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCATGTTGTATTGAGAGGTGCCACTCTAAGACATTACGGCAGCTGCTACACGATCATGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGACGAAGATGTTAAACTTAGGGTTGAAAGGTTTTTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTGAAGGTGAAAAACAAGTTAATGTGCTGGGTCTAAAGCAAAGTGCATCAACATTGGCAAGTGAGGACGAACAAAGACGAGGTCATATGAATGGAACTGTGTCATATTCAAGTTTGCCTCAATCTGCCATGGGTTCATCAGATATTCTGACCGAAGGAAATGGTGTTAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCGCTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAAGATGGTGTCTATTGTGTAAACCCTATGGAGTCTATGGATTCAACAAGATATTCCTCTCATCAGCATATGGAAGATGATACAAATAGCGATCTTAAAATTTTGAGCCTTAAAAATGGGAGGGTCCTACAGAAGGATCAGAGTAGTAAAAGAGCCGACGGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATAATGTCTGGAAAAGATAACCTGGGTTATGAATCGGGTTCGGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAAAAAGTCCAAGACTAGAAGGGCAGTGAAGATAAAAGGTACTCCAGTTGGAGGATCCCGTAAGGTTGGGCGTTCTACATTGTTTGGTGAGTGTGGTAAGAGGAGGAAAAAGGAGGGTAAAAGATAA 3597 0.4376 MNDPSSLHLKKELTQIRKASRVLRDPGTTSSWKSTTSRSAAPFRNNHHHHLPSPSANSNNRKVFLYNWNNYKSSPSFSHHQQLEEEDHSSSSLLASLEEHGFSDAPNVLDSKSDAGTRSSFFPNSTIPLHHHLNNNNNKKKKKKNKPLLLPRHSNDHHHHSDQDDDYSNSVSGASSLLLKLKNHNNSSNFITTRRRIRSSKDDDSSYTYSTPALSATSFNRYRRRYPSTVGSFDGTTTSMNDGDDEIDDDHLDLPGRQGCGIPCYWSKRTPRNRVAGCGSCCSPSLSDTLRRKGSTILCGTQSMYSRHCRSSSSTSLPHKRRMSLRNAQRGGGERGVVPLLTSTSSGDVRQGSSSIGIGRSRTDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLHEDEEGSSDNGRSFSHKYKPLFFGELIGQNIVVHSLVNTVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCRECADYVSGKSLDLVEIDGTSKKGIDKARYLLKRLSVVSSAAASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKICTQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKSDGSFVGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDHTQSSSSRRQSCKTTEDDPSSGSRDISSFKHKSDLQYMSQKSTPAASHLKAVNDSSSLQMDMPSKIDGFILKSKPSNSPVIDDGSTVVSLDDLIVGNTMFRCIDSGKLCDIWACCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDEDVKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGEKQVNVLGLKQSASTLASEDEQRRGHMNGTVSYSSLPQSAMGSSDILTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYCVNPMESMDSTRYSSHQHMEDDTNSDLKILSLKNGRVLQKDQSSKRADGYPMSPSILHDSSLAIMSGKDNLGYESGSGAGGCGFLCWNKKSKTRRAVKIKGTPVGGSRKVGRSTLFGECGKRRKKEGKR 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05669 1198 MobiDBLite consensus disorder prediction 134 148 - -
Trre15g05669 1198 CDD HLD_clamp_pol_III_gamma_tau 591 654 IPR045085 -
Trre15g05669 1198 FunFam DNA polymerase III subunit gamma/tau 592 654 - -
Trre15g05669 1198 CDD AAA 429 588 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 979 1021 - -
Trre15g05669 1198 Coils Coil 724 754 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 103 169 - -
Trre15g05669 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 638 IPR027417 -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 989 1008 - -
Trre15g05669 1198 NCBIfam DNA polymerase III subunit gamma/tau 415 765 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre15g05669 1198 MobiDBLite consensus disorder prediction 110 133 - -
Trre15g05669 1198 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 418 820 - -
Trre15g05669 1198 SMART AAA_5 447 598 IPR003593 GO:0016887
Trre15g05669 1198 MobiDBLite consensus disorder prediction 17 59 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 768 799 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 1171 1198 - -
Trre15g05669 1198 SUPERFAMILY post-AAA+ oligomerization domain-like 662 763 IPR008921 GO:0003677|GO:0006260
Trre15g05669 1198 MobiDBLite consensus disorder prediction 24 42 - -
Trre15g05669 1198 Gene3D - 407 589 IPR027417 -
Trre15g05669 1198 Pfam DNA polymerase III, delta subunit 430 591 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 783 799 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 149 166 - -
Trre15g05669 1198 FunFam DNA polymerase III subunit gamma/tau 411 590 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 310 361 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 339 361 - -
Trre15g05669 1198 Gene3D - 593 654 - -
Trre15g05669 1198 Gene3D - 655 769 - -
Trre15g05669 1198 MobiDBLite consensus disorder prediction 768 782 - -
Trre15g05669 1198 Pfam DNA polymerase III subunits gamma and tau domain III 645 765 IPR022754 GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05669 Trre-Chr15 64925304 64931055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05669 418 706 Core DNA Replication Machinery Family AT1G21690 24.579 3.96e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05669 - - gmx:100814391 1519.6