Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05668 ATGGAAGGAATAGGTGGTGGTGGTGGTGGTGGTCATCCAGTACCTCGAACAGTTGATGAGGTTTTCAGCGACTACAAAGGCAGACGCGGTGGTTTGATCAAGGCTCTCACTACTGACGTTCAAAAGTTTTACCAGCTCTGCGATCCTGACAAGGAGAACTTATGCCTATATGGATATCCAAACGAAACATGGGAAGTGAATTTGCCGGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGACGGGATGCAGGAGAAGGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTTTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAGCTTGTGACAGGAAATGCTAAGCAATCGAAGGACCAACCAACCGCTCACAATAATGGTAGCAACAGCAAATACAAGTCAAGTGGAAAGTCTCGTCAGTCTGAGCCTCAGGCCAAGGGTGTGAAGATGTCGGTACCACCCAAAGAAGAGGAGGACAGTGGTGAAGAAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTTTGGATCTGTTGTGATATGTGTGAGAGATGGTTTCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCTGAACACATCAAGCAATACAAATGCCCCAGCTGCAGTATCAAGAGGCAAAGAGTTTGA 786 0.4517 MEGIGGGGGGGHPVPRTVDEVFSDYKGRRGGLIKALTTDVQKFYQLCDPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGNAKQSKDQPTAHNNGSNSKYKSSGKSRQSEPQAKGVKMSVPPKEEEDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSIKRQRV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05668 261 MobiDBLite consensus disorder prediction 190 206 - -
Trre15g05668 261 CDD PHD_AL_plant 208 257 IPR044104 -
Trre15g05668 261 Pfam Alfin 17 144 IPR021998 GO:0006355|GO:0042393
Trre15g05668 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 255 IPR013083 -
Trre15g05668 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Trre15g05668 261 SMART PHD_3 207 255 IPR001965 -
Trre15g05668 261 FunFam PHD finger alfin-like protein 200 256 - -
Trre15g05668 261 Pfam PHD-finger 208 255 IPR019787 -
Trre15g05668 261 MobiDBLite consensus disorder prediction 147 207 - -
Trre15g05668 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Trre15g05668 261 PANTHER CPG BINDING PROTEIN 15 260 IPR045104 GO:0006355|GO:0042393
Trre15g05668 261 SUPERFAMILY FYVE/PHD zinc finger 196 258 IPR011011 -
Trre15g05668 261 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05668 Trre-Chr15 64918742 64922440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05668 1 259 Alfin-like Transcription Factor Family AT1G14510 77.220 6.76e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre15g05668 Alfin 3.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05668 K26274 - gmx:100807826 441.425