Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05664 ATGGCAATAGCAAGAGCAGCATCACCTACCATGAGCATGAGTATGAGTATGAGTATGAGTTTGAGCCATAGTCACGAAGATGGAAACAATAATAATACTACTACTAATTCCAACGACAGCAATACTAAGGCAACTACAGTAGCAGATGATGATGATGATGATGATCACGAGCATGACTTGGTTATGCCTGGTTTTCGTTTCCATCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAACGTTTCAACGTTGAGCTCATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTACTTTTATGTTCCTCGAGATAGGAAGTATCGAAACGGTGATCGTCCCAACCGAGTAACTACTTCTGGTTATTGGAAGGCCACAGGAGCTGATAGGATGATTCGAACTGAAAACTTCCGTTCAATTGGACTCAAGAAAACCCTAGTTTTTTATTCTGGAAAAGCTCCTAAAGGTATCAGAACCAGTTGGATTATGAACGAGTATCGTTTGCCTCAACATGATACCGAAAGATATCAAAAGGGTGAAATATCTCTATGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATCCGTCCCTCCCTCGTTGTCTCCCAATTACCAGACCATCATCATCAACAAGAGGTTCAGACAAGATTAATAAACAGCAACAACAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCATCAAAGACTGTAGTAAATAGTATTGATCATGATCATCATCAAATACTTAACAAAATGGATGTTGGAAGCAGTAGCAGCAGCGCTGTTGCCCCCGGTAATTCTTCGGATCATCATGATCATGTAACAACAGCTCTTGGACTTTCCAAGTACAGTCCTCCTCCTCCTCCTACTCATAATTACCGTACAGAGGAGGAAGAACAATTGATGATGATGCAGCAGCAGCCACCTAGGCAATTAGTACAATATGCAGCAGGAGGAAACTCTTTGTTTGTCCCTGTCTGTGGCGGCGCCATTTTCCCTGTTCCTGCAGCTTCAACTGCAGCAGCAGTAGCGAGTTGTTCTTCTTCTAATAACAGTACTGCAAGCGGTGCAATGATGATGGATGAACTCAACAGACTTGTAAGTTATCAACAGCAGCAGCAATACTGTTACAATGTTCAAAACAATATTCCAAATCCAAATCCAAATAATCACTTCTCTGCTTTGCTGATGCAACCAATGTCTCTGCCAAATCAACTGCCAACAAATTTCTCTGACCGACTGTGGGACTGGAATCCAATTCCTGAGGATCATAATAATCACCCCAACAGTAGTAGTAACAACACTACCTCCTTCAAGTAA 1386 0.4242 MAIARAASPTMSMSMSMSMSLSHSHEDGNNNNTTTNSNDSNTKATTVADDDDDDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHDTERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSTRGSDKINKQQQQNEILGMGFVVGQSSKTVVNSIDHDHHQILNKMDVGSSSSSAVAPGNSSDHHDHVTTALGLSKYSPPPPPTHNYRTEEEEQLMMMQQQPPRQLVQYAAGGNSLFVPVCGGAIFPVPAASTAAAVASCSSSNNSTASGAMMMDELNRLVSYQQQQQYCYNVQNNIPNPNPNNHFSALLMQPMSLPNQLPTNFSDRLWDWNPIPEDHNNHPNSSSNNTTSFK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05664 461 ProSiteProfiles NAC domain profile. 61 208 IPR003441 GO:0003677|GO:0006355
Trre15g05664 461 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 60 357 - -
Trre15g05664 461 MobiDBLite consensus disorder prediction 9 44 - -
Trre15g05664 461 MobiDBLite consensus disorder prediction 222 238 - -
Trre15g05664 461 MobiDBLite consensus disorder prediction 1 59 - -
Trre15g05664 461 MobiDBLite consensus disorder prediction 276 295 - -
Trre15g05664 461 MobiDBLite consensus disorder prediction 217 238 - -
Trre15g05664 461 Gene3D NAC domain 70 211 IPR036093 GO:0003677|GO:0006355
Trre15g05664 461 FunFam NAC domain-containing protein 35 70 211 - -
Trre15g05664 461 Pfam No apical meristem (NAM) protein 63 187 IPR003441 GO:0003677|GO:0006355
Trre15g05664 461 SUPERFAMILY NAC domain 61 207 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05664 Trre-Chr15 64898510 64900971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05664 11 242 NAC Transcription Factor Family AT2G02450 70.259 8.16e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g05664 NAM 5.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05664 - - tpra:123910806 670.618