Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05646 ATGGATTTGGAACACGTTCTTTCCCAATTAAAAATAAACTCTAACATCGTCAACAAACTCATTCAAACAATCTCACCATCCGACGTCGATTATCGCTCTAAAATCGCCACCATACTCAGAACCCTAGAAGATCAATTGCGAAAAGCATCTATCCATGAATGGATGCTTGAACTTCTCGAGGTACTTGAACAACTTTTTCTTCTTCATTCTAAACCAACCACTACCTTCTTTCAAGACGCTTATTGCGCCATTGCAGTCGAGTTTACTTTGAAGTACCTTCATGTCACTACATCACGCCCTTATTACCTCCAAGCTGTCGAGACTATATGGTACGGTAGGGTTCATCACATGGAAATGTCTTGGCAAAGTGATTTGTTTTCTCATGAATTGGAAAACTGGAAAAATCAAATCAGGAATTCCCTTTTGGACCCACGGATCATGAAAAACCTCGCTTGCATTCCAAATACTCGACGGAATGCACTTCAAAAACTTGAAGTTTTTTTGGCTGAAGCTTGGGATAACCTAGGTCCGCCTCAGAATTTGGATGTCATTGTCAATGACTCGCGTGTCATAGCAACTGTAATCAAAGGCAAGTCTATTAATACTGTTGATGCTGAGGGAATGGATGAAACAGCCTCTTGTAGCAAAATCAACTCTATGCCGGTTGATGAGGTTCCAAAGACTGGGGAATCTCTTCAATGTAGTTCTGATGAGTTGGAAACCCAGGAAGTTGAGGACATGAATGAAGAGGCACAGTTGGAAAACGACTGTTCAGATACTGTTGATACTGAGAGAATGGATGCAACAACCTCTTATTGCAAAATCAACTCTATGCCGATGGATGAGGTTCCAGAGATTGGGGAATCTCTTCAATGTAGTTCTGCTGTGTTGGAAAACCAGGAAATTGAGGACGTGAATCAAGAGGGACAGTTGGAAAGCAATAGTCCAGATGCATATGTACCCATCTTGCAAGCTTGCCAAAGTATTAATAATAACAAGGCTAATCATAAAAAGACAACCTCTGCCCATCAGAGTGATGTTCATCGGCCTAGCTTGATGGAACCAAATTGTTCTGCTCGTACTCATGAGTGGGATGATTCGATTGGCTTGCAGGGAGGAACAAGTGACACAAGTAAAATTAGTTTGCCTAGTCCAAAATTGAGGAAACTTCCTCCATTTGAGGGTTATAAAGACAAAAGCATAAAAAAAAGGAGAAAGCACAATTCATGGAGTCAATTGGAAGAGGATAATCTAAGGGCTGGAGTAAAAGTATTTGGCCATGACTGGAAAAATATCTTTAATTCTTTCACATTTGAAGGGAGAAACCCAGTTAATTTGAAAGACAAATGGAGAAACATGCTCAGGAGTGGACAAGCACAAGAATGA 1386 0.4062 MDLEHVLSQLKINSNIVNKLIQTISPSDVDYRSKIATILRTLEDQLRKASIHEWMLELLEVLEQLFLLHSKPTTTFFQDAYCAIAVEFTLKYLHVTTSRPYYLQAVETIWYGRVHHMEMSWQSDLFSHELENWKNQIRNSLLDPRIMKNLACIPNTRRNALQKLEVFLAEAWDNLGPPQNLDVIVNDSRVIATVIKGKSINTVDAEGMDETASCSKINSMPVDEVPKTGESLQCSSDELETQEVEDMNEEAQLENDCSDTVDTERMDATTSYCKINSMPMDEVPEIGESLQCSSAVLENQEIEDVNQEGQLESNSPDAYVPILQACQSINNNKANHKKTTSAHQSDVHRPSLMEPNCSARTHEWDDSIGLQGGTSDTSKISLPSPKLRKLPPFEGYKDKSIKKRRKHNSWSQLEEDNLRAGVKVFGHDWKNIFNSFTFEGRNPVNLKDKWRNMLRSGQAQE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05646 461 Gene3D - 399 459 - -
Trre15g05646 461 CDD SANT_TRF 410 455 - -
Trre15g05646 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 402 458 IPR017930 -
Trre15g05646 461 ProSiteProfiles Myb-like domain profile. 402 454 IPR001005 -
Trre15g05646 461 Pfam Myb-like DNA-binding domain 408 454 IPR001005 -
Trre15g05646 461 PANTHER MYB TRANSCRIPTION FACTOR 2 455 - -
Trre15g05646 461 SUPERFAMILY Homeodomain-like 404 455 IPR009057 -
Trre15g05646 461 MobiDBLite consensus disorder prediction 368 382 - -
Trre15g05646 461 SMART sant 406 456 IPR001005 -
Trre15g05646 461 MobiDBLite consensus disorder prediction 368 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05646 Trre-Chr15 64726495 64728762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05646 354 454 Single Myb Histone (SMH) Gene Family AT1G15720 35.238 1.35e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g05646 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05646 - K11111 tpra:123910825 625.935