Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05641 ATGAAAAGACTCGCCGACGAATCAGCCGCCGCTACTATACCCAAACCAGTCTTCCTCACCAAAGCTGAGCGTGAACAGCTTGCTCTTCAACGCCGTCACGATCAAATCGCCGGTCACAAGCGCAACCAAGAAGAACTTCTCCTTTCCACTAATAACCGCCCCTCCGATCCCAAACCCTCTGACTCCGACCGCCGAGACCGTGATCGTGACCGCGACCGCGAACGTGACAGAGATAGGGATAGTTACAGAGACAGAGAAAGGGATAGGGATAGAGATAGAGATAGAGATAGAGATAGGGAACGAGAACGAGATAGGGAAAGGGACAGAGATAACAGAGATCGGGAACGAAGAAACCGTGATAGGGAACGTGAAGAAGAGAATAAGGCTCGCGAGCGTGTTCGTGAGGAGAAGCTAGCGGAGAGGGAGCGTGAGAAAGAGCTTGAATCGATCAAGGAACAATACCTAGGTTCTAAAAAACCTAAAAAGAGGGTTATTAAACCTAGCGAGAAATTTCGATTTTCATTCGATTGGGAAAATACTGAAGATACCTCTCGTGATATGAATAACCTTTACCAAAACCCTCACGAGGCTCAGCTTCTCTTCGGTCGAGGGTTTCGTGCTGGGATGGACCGTCGTGAACAGAAGAAGCTTGCTGCTAAGAATGAGAAAGATTTGAGGGACCAAATCAGGAAGAAGGACGGTATTGAGGAGAAGCCAGAGGAGGCTGATGCTCAGCGGCGTAAGGAGGAGGCTGCGGAAATGTATGACACTTTTGATATGAGGGTTGACCGCCATTGGAGTGATAAGAAGCTTGAAGAGATGACGGAGAGGGATTGGCGTATATTTAGGGAGGATTACAACATTTCCTACAAAGGTTCAAAGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGCCAAGAGCTTTTGAAGGCTGTGGAGAAGGCTGGCTACAAAACCCCTTCTCCCATTCAGATGGCTGCTATTCCCCTCGGCCTTCAGCAGCGTGATGTTATCGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCATTTGTCCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCTGTTGTTATGGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGGACGAGACTGTTAAATTTGCTCAGTATATGGGAATTAAAGTGGTTTCCATTGTTGGTGGACAGTCTATTGAGGAACAAGGGTTTAAAATAAGGCAGGGTTGTGAAATTGTGATTGCCACTCCTGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCGGTTCTCAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGAATGATTGATATGGGATTTGAGCCACAGGTCATGGGTGTGCTGGATGCGATGCCTTCCAGTAATCTCAAACCTGAGAATGAAGACGAGGAGCTTGATGAGAAGAGGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCTCCTGCTGTAGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATCGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATCATATAAGCTTCATAGATTGTTGGATGAGCTTAATGACAAGACCGCAATTGTGTTTGTTAACACCAAGAAGAATGCTGATTTTCTTGCTAAGAATTTGGATAAGGAGGGCTATCGCGTGACCACTTTGCACGGAGGAAAATCACAGGAACAGAGGGAGATTAGTCTTGATGGATTTAGGGCCAAGAGATATAATGTGCTTGTTGCAACTGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAGTTGGCAAGGCACGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCCAGGCGAAACGACACTGTTTTTGCTCATTAG 2163 0.4674 MKRLADESAAATIPKPVFLTKAEREQLALQRRHDQIAGHKRNQEELLLSTNNRPSDPKPSDSDRRDRDRDRDRERDRDRDSYRDRERDRDRDRDRDRDRERERDRERDRDNRDRERRNRDREREEENKARERVREEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNNLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDLRDQIRKKDGIEEKPEEADAQRRKEEAAEMYDTFDMRVDRHWSDKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKSYKLHRLLDELNDKTAIVFVNTKKNADFLAKNLDKEGYRVTTLHGGKSQEQREISLDGFRAKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05641 720 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 300 328 IPR014014 GO:0003724
Trre15g05641 720 Pfam Helicase conserved C-terminal domain 553 658 IPR001650 -
Trre15g05641 720 MobiDBLite consensus disorder prediction 695 720 - -
Trre15g05641 720 Gene3D - 531 718 IPR027417 -
Trre15g05641 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 553 697 IPR001650 -
Trre15g05641 720 Gene3D - 261 530 IPR027417 -
Trre15g05641 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 526 IPR014001 -
Trre15g05641 720 FunFam probable ATP-dependent RNA helicase DDX23 261 530 - -
Trre15g05641 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 679 IPR027417 -
Trre15g05641 720 MobiDBLite consensus disorder prediction 211 248 - -
Trre15g05641 720 MobiDBLite consensus disorder prediction 57 159 - -
Trre15g05641 720 Coils Coil 105 153 - -
Trre15g05641 720 Pfam DEAD/DEAH box helicase 325 515 IPR011545 GO:0003676|GO:0005524
Trre15g05641 720 SMART ultradead3 319 541 IPR014001 -
Trre15g05641 720 MobiDBLite consensus disorder prediction 688 720 - -
Trre15g05641 720 FunFam probable ATP-dependent RNA helicase DDX23 531 719 - -
Trre15g05641 720 CDD SF2_C_DEAD 538 667 - -
Trre15g05641 720 SMART helicmild6 577 658 IPR001650 -
Trre15g05641 720 CDD DEADc_DDX23 311 527 - -
Trre15g05641 720 MobiDBLite consensus disorder prediction 30 163 - -
Trre15g05641 720 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Trre15g05641 720 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 240 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05641 Trre-Chr15 64691018 64693180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05641 298 680 Eukaryotic Initiation Factors Gene Family AT3G19760 30.990 1.59e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05641 K12858 - gmx:100799264 1117.45