Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05630 ATGAATGCAGGTGCACTGAAGTTATCAGTCTCTGAGATGAACACGAGGCAGCAAGTGGGAGAACAGAACAATAACCACTCATCAGGAGGAACAGAACAAGACAATGAATGCACTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGAAAGATTCTACCACCGCATGCAAAAATATCTGACGATGCAAAAGAAACAATTCAAGAGTGTGTCTCTGAATACATCAGCTTCATAACTGGAGAAGCAAATGAACGTTGTCAGAGAGAGCAAAGGAAGACAATAACTGCTGAAGATGTTCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACTATGTATCTTCATCGTTATCGTGAGCTCGAGGGCGATCGTACTTCGATGAGAGTTGAACCGTTGGGAAAGAGAGGTATGGATCAATATGGAAATGCTGCTTTAGGAGGTTTTGTTCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCACCAACTTATATGATGAGGGATGGTAATAACAATAATGGAACTAATGCTGTTGGAGGTTCTTCTCATTCTCATGCTGCACATGCTGAAGCAAATGGTCATCATCATCATCAATATAAATAA 648 0.4059 MNAGALKLSVSEMNTRQQVGEQNNNHSSGGTEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMDQYGNAALGGFVPQFHIGHPNGGYYGNAPTYMMRDGNNNNGTNAVGGSSHSHAAHAEANGHHHHQYK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05630 215 Gene3D Histone, subunit A 31 154 IPR009072 GO:0046982
Trre15g05630 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Trre15g05630 215 SUPERFAMILY Histone-fold 42 139 IPR009072 GO:0046982
Trre15g05630 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 195 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre15g05630 215 MobiDBLite consensus disorder prediction 1 38 - -
Trre15g05630 215 MobiDBLite consensus disorder prediction 184 215 - -
Trre15g05630 215 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre15g05630 215 MobiDBLite consensus disorder prediction 7 35 - -
Trre15g05630 215 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Trre15g05630 215 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Trre15g05630 215 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Trre15g05630 215 FunFam Nuclear transcription factor Y subunit B-6 34 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05630 Trre-Chr15 64636745 64637392 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05630 5 181 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.351 1.06e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre15g05630 CBFD_NFYB_HMF 5.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05630 K08065 - gmx:100800011 258.84