Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05620 ATGGGCAGTGATGAGGCTCAACAGTTATTGCTTTCACAGTCAAGGGAATATTCTCATCTTAATGAGAAGAGCGACCTTCTTCAGAGAAGAAGACCACGGCGTGTTGGCACTTCAGAGACAGATATCAATATGCCGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTACTACCTCAATGTATAGATGAAAAACATGAAGCAGAATTCAATTTAAGGCCAGTGTTCTTGTGTTTAGCAGCTTACCTAGGTACAGGTACCATATGTTTCTTTCTCACAAGTTACCAAATTCAGGGTATAAAAACAAATGGATTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCTAATAGCACTATAGCAAAATTACTTGCTTGCATTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACAAGAAATATTTGTTGTTAAAGCCATGCACAAAGCTGAAAAATTTGGTCCAGAAGAGATTTCGAAAGAACTTGGAACTAATAAAAGCAAATACAAGTTTGTGCTAGCAGCATCTACTTTTCTTGTGCTCATGATTGTAGGGACTGTTTTTCTGTATTTTATCGAAAAACTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCGACAGTCACAACTTTAGGTTATGGAGATAAGAGCTTCTCAAGTGCTGCTGGTAGGACTTTTGCTGTGTTTTGGATATTGAGCAGCACCATCTGCTTGGCTCAGTCTTTTGCATATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTCGCAAAAATGGTTCTTGCGCGAAAATTGTCTCTCCGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGCTGTCAGTGCTGCAGAGTTCGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTACAGTTGTGATGGAACTTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTCTGAATTCTGA 1059 0.3881 MGSDEAQQLLLSQSREYSHLNEKSDLLQRRRPRRVGTSETDINMPQEQNGVLQTPLLPQCIDEKHEAEFNLRPVFLCLAAYLGTGTICFFLTSYQIQGIKTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFVVKAMHKAEKFGPEEISKELGTNKSKYKFVLAASTFLVLMIVGTVFLYFIEKLDFVDALYCVCSTVTTLGYGDKSFSSAAGRTFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLARKLSLRDLEAADLDGDKAVSAAEFVVYKLKEMGKINQEDITVVMELFRKLDCDQSGTLTEADIRNSEF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05620 352 Gene3D - 68 162 - -
Trre15g05620 352 MobiDBLite consensus disorder prediction 20 37 - -
Trre15g05620 352 Pfam Ion channel 199 270 IPR013099 -
Trre15g05620 352 Pfam Ion channel 77 157 IPR013099 -
Trre15g05620 352 PRINTS Two pore domain K+ channel signature 230 239 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre15g05620 352 PRINTS Two pore domain K+ channel signature 113 141 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre15g05620 352 SUPERFAMILY Voltage-gated potassium channels 184 285 - -
Trre15g05620 352 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 102 324 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre15g05620 352 SUPERFAMILY Voltage-gated potassium channels 69 158 - -
Trre15g05620 352 Gene3D - 176 277 - -
Trre15g05620 352 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Trre15g05620 352 Gene3D - 284 351 - -
Trre15g05620 352 MobiDBLite consensus disorder prediction 20 41 - -
Trre15g05620 352 SUPERFAMILY EF-hand 292 349 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05620 Trre-Chr15 64556454 64557722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05620 53 347 Ion Channels AT5G55630 59.661 7.93e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05620 K05389 - gmx:100799492 514.612