Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05611 ATGAAGGAGGAATGTTTCCCCCTGGAATCATACCCTGAAATCGCTGCTTTCATAGATTGTGATTCTCCTTCATATGCCAGTGTATCATCTAACAAGAGTCCATTTTCTCCACAAGATTCTCAATCTCAATCGTGCCATTCAGATCATCAACAATCATCTGACAACACTTATGGATCGCCGATAAGCGGGATGTCCAGTGTTGATGATGGCCATGATTTGAAGCACAAACTTAGAGAACTGGAGAATTCGTTGTTGGGGTCTGATGATTTCGATATTGTTGACAGTTATGGAAACTGCACGGAGACTAGCCTCCACGGAGCATCTCCATCAGCTAAATATGATTGGGATCTAATTGCAGAAAACATTCAAAAGCTTGACGTGAAAGAAGTCCTCTTGCTATGTGCACAGGCTGTGTCTGATGGTGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGCGAAGATGGTATCAGTCGCTGGAGATCCAATCCAGAGGCTAAGTGCTTACTTGTTAGAAGGGCTTAGAGCTAGATTAGAATCGTCTGGAAGCTTGATCTACAAGGCGTTGAAATGTGAACAACCAACGAGCAAAGAACTATTGAGTTACATGCACGGAACACAATGGCTTCTACTTATTAAAGCGCTTGCAAACAGGCCTGGCGGACCACCTTTTATTCGGATAACAGGTGTGGACGATTCACAATCATTTCATGCGCGTGGTGGAGGACTTCAGATTGTAGGAGAAAGGATTTCAGACTTTGCCAGGTCTTGTGGAGTTCCGTTTGAGTTCCACAACACTTCAATGACTGGTTGCGAAATCCAACGAGAAAATCTTAAAATTAGACCTGGAGAAGCTCTTGCTGTCAATTTTCCCTATTTTTTGCACCATATGCCGGATGAGAGTGTGAGCATAGAGAACCATAGAGACAGATTGTTGAGATTGGTTAAGAGTTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCATTCTTTCATAGGTTTGTGGAGACAATGGATTATTACACAGCTATGTTTGAATCAATAGATGTGGCTTGCGCCAAAGACGATAAGAAGCGGATTAGTACGGAGCAGAACTGCGTAGCACGGGACATTGTTAACATGATAGCCTGCGAGGGGATTGAGAGGGTGGAGCGGCATGAAGTTTTTGGAAAGTGGAGGATGAGATTTTCCATGGCTGGATTTAGACAGTGCTCATTGAGTTCTTCAGTGATGCATTCTGTGCAAAATATGTTGAAGGACTATAATCAAAATTATAGACTTGAACATAGAGATGGTGCTCTCTATCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGAGATGTAACTGA 1386 0.4307 MKEECFPLESYPEIAAFIDCDSPSYASVSSNKSPFSPQDSQSQSCHSDHQQSSDNTYGSPISGMSSVDDGHDLKHKLRELENSLLGSDDFDIVDSYGNCTETSLHGASPSAKYDWDLIAENIQKLDVKEVLLLCAQAVSDGDIPTARGWMDNVLAKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKALKCEQPTSKELLSYMHGTQWLLLIKALANRPGGPPFIRITGVDDSQSFHARGGGLQIVGERISDFARSCGVPFEFHNTSMTGCEIQRENLKIRPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHEVFGKWRMRFSMAGFRQCSLSSSVMHSVQNMLKDYNQNYRLEHRDGALYLGWMKRAMATSSAWRCN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05611 461 MobiDBLite consensus disorder prediction 24 63 - -
Trre15g05611 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 82 206 IPR005202 -
Trre15g05611 461 ProSiteProfiles GRAS family profile. 118 459 IPR005202 -
Trre15g05611 461 MobiDBLite consensus disorder prediction 24 70 - -
Trre15g05611 461 Pfam GRAS domain family 128 200 IPR005202 -
Trre15g05611 461 Pfam GRAS domain family 203 459 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05611 Trre-Chr15 64501865 64503367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05611 2 461 GRAS Transcription Factor Family AT4G17230 55.179 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre15g05611 GRAS 2.2e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05611 - - gmx:100776109 681.789