Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05602 ATGACTCCGATCGTAACCCCTATACTTCAACCACAACAACAACAAAATCGTTCATCGTCGAAACGTAAATTAGACGATGACGATGAAAACAACGTGTCAGATGATGACTTAGTCTATGTTAGAATGAGGAAAGAAGAAACAACAAAAACAACATTTAATCCATGGAGCGGCGGTAGTAGTGGTGGTGGTGGTTGTAATGGTGGTTTATTGAAGAAAAAATCAGATATTCAATTTTTTATTCGAATGATGCCAAAAGGAAATAGCCTTGTTATGCACGCTTATCCAGAAGATACTGTGAAATCAATTCATGAACGGTTAGTAGAATTGCATAGTATACCTATTTTTGAACAGAGATTGATTTTTAGAGGTAAACAGCTTCAGTGGGAACAAACTATTGCTCAGTGTGGTATACAAAGAGATGTTAGTCTTGAACTCGTTGGTCGAATTCGGAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTGTTGTTTATGATCTTTGTCGTCAACAACCTGTTGAGGAAGCTCCTAAAACTGTTAAGAGTCTTCTTACTAGTTACATCAGCTTGGCTCTCACTCCTAAACCCAAACTTGATGCTGATTCTGCTACAAGCTATTTCGGGATTTTCATTAATTCTGCTGCCATTTCGGTTCTTGTTACTCTCTATGTTTCACCTTACAAGGTTAACAAGGACACTGCTGATTCTTGTATTAGGCATTTTTTGAATTGTTGTAGGACTTCATTGTCTAAGAATTTTCATACTCAGGCTGCACGTGTGGCGTTGGAGTTTTGTAAATTTCTTAGGAGAGGAGCGGGGACTCATGATCCTTTGTATCTCTTTTGTCGTAGTAGTTTGGGGGGTTTTCTGGAGGATGCTGAAGTTTCACTTGCTTCTTCCGAGGATCAGAATTTTAAAGGTTTGGTATTAGTACAAGATTTGTTTCCGTTTGTTCGCGAACTTGCTGATAGTTTGTTGATGAATTTGGAGTCGAGCATTGATTCCCCTTCACTTGCTTGTCCTTTGTTGACCAATATTGGGGATTTTACTGCATTTTTAGTCCCTGTGAGGACTGGAATTGAGCAACATCAGGCTCTCCGGGGTTGTGTCCCTTACCACAAGCTCGATAGGAACGGCTTGGTTGTTGAAGAGATTGAATACCTTCATCTGTTGTACAATCAGTTGTTGTGCAAAATTGATACATGCCTTCATAAAATGGGGAAGAGATTCTTTGACAAGGAAATGGTGGATGAGGAACATTATTTTTATCCTGCTTGTTCTCTCTATCTTTCCCTTTTGAAGGAGTTGCATAATCTCTCTAAGCTTTATGACGGCGCTCCAGAAAAGCTCCGGGGTGTTTTGATGCGTCAAAAGACTGTGATGTGTCTGATGATCGTTAAATATGCAAAGAGGGCCGATGAGCATCAGTGGATTCTCGAGCACAAGAATGTCACTAATTTCGAGACTAGGAGGCATCTGGCCATGATGATTTTCCCGGAGGTAAAAGAAGACTATGATGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTCGAATACATTGCACGGGCTGATCCCGAATCACTGCGTGCTGGACTGTTTATGGAGTTCAAAAACGAGGAAGCCACTGGCCCTGGTGTGCTGAGGGAGTGGTTCCTTTTGGTTTGTCAAGCAATATTCAATCAGGCAAACGCCCTTTTTGTTGCCTGCCCAAACGATCGAACAAGGTTTCTCCCCAATTCTGCTTCCAAGGTACATCCTCTGCATCTTGAGTACTTCTGCTTCTGTGGTCGAGTTATTGCATTAGCTTTAATGCATAGCGTGCAAGTAGGTATTGTTTTTGATCGCACATTTTTCTTGCAATTGGCTGGAAATCCTATTACTTTAGAAGACATAAGGGAAGCAGATCCTGCCCTGTATAAAAGCTGCAAGCAGATATTGGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGCAGTCGAGCTCTGTACTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACAGCCATATCTGAGCAGGTGTCACACTTTTCCAAAGGTTTTGCTGATATTCTTTCATGTTCAAAGCTCCAGCAGTTCTTCTTTCGAAGTTTAGAGCCTGAAGATCTTGATTATATGCTGCGTGGGAGTGAAGATGGCATTTCAATCGAAGATTGGAAAGCACACACCGAATATAATGGCTACAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCTGTGGTTTGAGTTCCCGTCTCCACATTTACAAGTCCCATGAACCTTGCAACCGTCTTCCTTCATCTCATACATGCTTTCACCGGCTGTGTTTCCCAGTTTATCCGTCTATGCCTGTCATGGAAGCTCGTCTTAAAGTCATTACTCAAGAACATATTGGCAGTAGTTTTGGTACTTGGTGA 2625 0.4095 MTPIVTPILQPQQQQNRSSSKRKLDDDDENNVSDDDLVYVRMRKEETTKTTFNPWSGGSSGGGGCNGGLLKKKSDIQFFIRMMPKGNSLVMHAYPEDTVKSIHERLVELHSIPIFEQRLIFRGKQLQWEQTIAQCGIQRDVSLELVGRIRSTEHPQAWQVVNDMVSVVYDLCRQQPVEEAPKTVKSLLTSYISLALTPKPKLDADSATSYFGIFINSAAISVLVTLYVSPYKVNKDTADSCIRHFLNCCRTSLSKNFHTQAARVALEFCKFLRRGAGTHDPLYLFCRSSLGGFLEDAEVSLASSEDQNFKGLVLVQDLFPFVRELADSLLMNLESSIDSPSLACPLLTNIGDFTAFLVPVRTGIEQHQALRGCVPYHKLDRNGLVVEEIEYLHLLYNQLLCKIDTCLHKMGKRFFDKEMVDEEHYFYPACSLYLSLLKELHNLSKLYDGAPEKLRGVLMRQKTVMCLMIVKYAKRADEHQWILEHKNVTNFETRRHLAMMIFPEVKEDYDELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVCQAIFNQANALFVACPNDRTRFLPNSASKVHPLHLEYFCFCGRVIALALMHSVQVGIVFDRTFFLQLAGNPITLEDIREADPALYKSCKQILDMDSDFIDSDALGLTFVREVEELGHRKAVELCTGGKNIVVNSKNRVKYVDLLIKDRFVTAISEQVSHFSKGFADILSCSKLQQFFFRSLEPEDLDYMLRGSEDGISIEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFCGLSSRLHIYKSHEPCNRLPSSHTCFHRLCFPVYPSMPVMEARLKVITQEHIGSSFGTW 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05602 874 Pfam Ubiquitin family 79 148 IPR000626 GO:0005515
Trre15g05602 874 ProSiteProfiles Ubiquitin domain profile. 76 152 IPR000626 GO:0005515
Trre15g05602 874 SUPERFAMILY Hect, E3 ligase catalytic domain 509 860 IPR035983 GO:0004842
Trre15g05602 874 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 77 872 - -
Trre15g05602 874 Gene3D Hect, E3 ligase catalytic domain 758 873 - -
Trre15g05602 874 Gene3D Hect, E3 ligase catalytic domain 634 716 - -
Trre15g05602 874 MobiDBLite consensus disorder prediction 19 36 - -
Trre15g05602 874 Gene3D Hect, E3 ligase catalytic domains 514 741 - -
Trre15g05602 874 Gene3D - 70 165 - -
Trre15g05602 874 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 634 716 - -
Trre15g05602 874 SUPERFAMILY Ubiquitin-like 76 164 IPR029071 -
Trre15g05602 874 FunFam E3 ubiquitin-protein ligase UPL5 758 873 - -
Trre15g05602 874 MobiDBLite consensus disorder prediction 1 36 - -
Trre15g05602 874 SMART ubq_7 76 148 IPR000626 GO:0005515
Trre15g05602 874 PRINTS Ubiquitin signature 87 107 IPR019956 -
Trre15g05602 874 PRINTS Ubiquitin signature 108 128 IPR019956 -
Trre15g05602 874 PRINTS Ubiquitin signature 129 150 IPR019956 -
Trre15g05602 874 MobiDBLite consensus disorder prediction 1 18 - -
Trre15g05602 874 CDD HECTc 513 872 IPR000569 GO:0004842
Trre15g05602 874 SMART hect_3 532 872 IPR000569 GO:0004842
Trre15g05602 874 ProSiteProfiles HECT domain profile. 534 874 IPR000569 GO:0004842
Trre15g05602 874 Pfam HECT-domain (ubiquitin-transferase) 563 866 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05602 Trre-Chr15 64371104 64377661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05602 76 151 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.895 2.97e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05602 - - gmx:100789233 1187.56