Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05580 ATGAAACTCGACAACTCGAACTCCAACGGCCAGATGTCTTTCGCCGCTGACGTTACTCCGCCGAATAACTCCGACGACGCCGATGAGGCATTCGTTCCGCCGCTGAATTTTGCTATGGTTGATAACGGTATTTTCAGGTCCGGTTTTCCCGATTCCGCCAACTTCGGATTCATGAAATCGCTTCGTCTCCGTTCCGTAATATGTTTGTGCCCTGAACCCTATCCTGAAACGACTGCGGAGTTTTTGAAGGCCAATGGAATAAGGCTTTATCAATTCGGCATCGATGGATGCAAGGAACCCTTTGTCAACATCCCAAATGATAAGATTCGCGAGGCCTTGAAAGTAGTGCTCGATGTTAGGAATCACCCTGTACTGATTCACTGTAAACGAGGAAAGCACCGTACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCTATTTTTGATGAGTACCAAAGGTTTGCAGGCGCCAAAGCCAGAGTCTCAGACCAGAGGTTCATCGAATTGTTTGACATTTCCAGTTTGAAGAACAACCCACTGTCCTTTTCATGCTCAAGGAAATCAGAATTGAAATAA 594 0.4596 MKLDNSNSNGQMSFAADVTPPNNSDDADEAFVPPLNFAMVDNGIFRSGFPDSANFGFMKSLRLRSVICLCPEPYPETTAEFLKANGIRLYQFGIDGCKEPFVNIPNDKIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAGAKARVSDQRFIELFDISSLKNNPLSFSCSRKSELK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05580 197 Gene3D Protein tyrosine phosphatase superfamily 30 180 IPR029021 -
Trre15g05580 197 FunFam probable tyrosine-protein phosphatase At1g05000 30 180 - -
Trre15g05580 197 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g05580 197 Pfam Tyrosine phosphatase family 32 185 IPR004861 -
Trre15g05580 197 CDD PFA-DSP_Siw14 31 177 - -
Trre15g05580 197 PRINTS Plant and fungal dual specificity phosphatase signature 68 81 IPR020428 GO:0016791
Trre15g05580 197 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Trre15g05580 197 PRINTS Plant and fungal dual specificity phosphatase signature 104 118 IPR020428 GO:0016791
Trre15g05580 197 PRINTS Plant and fungal dual specificity phosphatase signature 31 48 IPR020428 GO:0016791
Trre15g05580 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 190 IPR020422 GO:0006470|GO:0008138
Trre15g05580 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 126 136 IPR016130 GO:0016311|GO:0016791
Trre15g05580 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 178 IPR029021 -
Trre15g05580 197 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g05580 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05580 Trre-Chr15 64264266 64266490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05580 13 193 Protein tyrosine phosphatase (PTP) family AT4G03960 69.519 5.09e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05580 K18045 - gmx:100785520 347.051