Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05579 ATGGTTTTCAATATAGAAGAAGGTGGAATCCAAGACAAAGAAGAAGGAATCATGGAAGAAAAGTGTTCTACATTTAAGATTTGGGTTCAGCGTTTCAAAGAAGAGGAAAAAGAAACGATTCTTCCATCCACGCACTCCTTCAACTTCAATCTCCGGGAGAGTATGGGAAAATCAGGGGGTAGAAGAAAGAAGGGTGGTGCTGTTGTTGTTGACAACAATTCAGCTTCTGCACAAATTCCAAATGGTGGTGTTGAATTGGATTCGTCAATTTTTTTGAAAAAGGCACATGAAATGAAAGAAGAAGGGAATAGGAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTCGATTGACACCGAAAACGCATCCCGATAGGGCTGTTTTCCACAGCAATAGGGCTGCTTGTTTGATGCAAATGAAACCTATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCTCAATTTGTTCGGGCTCTACTTCGTAGGGCTCGAGCGTTTGAGGCTGTTGGTAAGTATGAATTAGCTGTGCAAGATGTGCAGCTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGGTTGAGGGCTGCTTTTGGGCATCGTCAGGAAGCTCAGCAGGATCTACACAGCCGACCTTCTCCTGCTGCGCTTGGCGCTTCTGCTGTCCGTGGTGCTCCTATTGCTGGGTTAGGTCCGTGTTTGCCAGCACGGCCTGCATCAAAGAAGGGAGCGAGTTCTGCTGTTGGGTCAGTTGTTTCTCCTAATAGCAAGATAGACAAGTCTCAAAATGTTTTACTGCCAAATGAAAATGGCCCTGAGACCAAGACCCAGTTGCCAAAAGTTGTATTGAAGCCTTTTAACAATGGTCCTGCAGTGCAACCTAACTCGAAAAATGAGAACCACAAGGATGTTCACAGGCAGAATTTGGAGGTTGCAATTCGGTGTAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTGAACTGCAGTTTCAGAGTACTGAGAGATGTAGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATGGTGACGGTGATTTGGTTACTATTACATCCACAGATGAACTCAGATTGGCAGAGTCTTTTGTTGATAGCTATCTGCTGAAGGAACCTGAATCAGATAAAAGCGATTCAATTTCGGTGCTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAGAAACTTGTTGAGAATGAAGGGACCAAGGGAGATGAGAGTGGATCTCATTCTTCCCTTGGTGAATCTGTCCCCGAAGTTGCAGAAGTTGCTGAAGTTACAGAAGTTACTGAAGTTCCTGATACTGATGGTGATAAGTTAATAAAGAAGGATGCTTCAAAGGAAAAGACGGGTGCCACAGGAGAAAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAAGAAACAGTAACAAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAATTCCAGGAGGTGGCAGCTTTGGCATTCTTCAACTGGGGTAATGTTCACATGTGTGCTGCTAGGAAGCGGATTCCTCTAGATGAGTCGGCTGGGAAAGACGTAGTGGCGGAACAGCTTCAAGTGGCTTATGACTGGGTCAAAGAAAAGTATTCTTTGGCAAGAGAGAAATATGAGGAAGCACTTGTGATCAAACCAGATTTCTATGAGGGACTTTTGGCTCTGGGCCAGCAACAATTTGAAATGGCCAAGCTCCATTGGTCTTTTGCGATTGCTAAGAAGATAGATCTTACAAGCTGGGATCCAACGGAAACTCTTCAACTGTTTAACAGTGCGGAGGAGAAGATGAAATCCGCAACAGATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAAGTGTTGAGAAGAAGAAAGAAACAAGGAAGTGCTGCTGAAGGCGAGTCTTCTAGTGCTGGTGGTCAAGGTGAGATATCTCCCGAAGAAGCTGCTGAGCAAGCAGTGGTCATGAGATCACAGATTCATCTCTTCTGGGGCAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTAGGAATGGATGGTTGGAAGACAAATCTAGATGCTGCAACAGAGCGCTTTAAGCTTGCAGGAGCTTCCGAGGCAGATATTTCAATGGTTCTTAAGAATCATTGCTCAAATGGAGATGCAAAAGGTGATGATAAAAAAATCCAGAGCCCACAACTTAACAAGACTGATGAACTAGAGATCAATAAGGCCAATCAAGTATGA 2496 0.4379 MVFNIEEGGIQDKEEGIMEEKCSTFKIWVQRFKEEEKETILPSTHSFNFNLRESMGKSGGRRKKGGAVVVDNNSASAQIPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGHRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGASSAVGSVVSPNSKIDKSQNVLLPNENGPETKTQLPKVVLKPFNNGPAVQPNSKNENHKDVHRQNLEVAIRCRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDGDGDLVTITSTDELRLAESFVDSYLLKEPESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEGTKGDESGSHSSLGESVPEVAEVAEVTEVTEVPDTDGDKLIKKDASKEKTGATGENECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALVIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLQLFNSAEEKMKSATDMWEKLEEQRAKELKDPNATKKEEVLRRRKKQGSAAEGESSSAGGQGEISPEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKTNLDAATERFKLAGASEADISMVLKNHCSNGDAKGDDKKIQSPQLNKTDELEINKANQV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05579 831 MobiDBLite consensus disorder prediction 802 831 - -
Trre15g05579 831 Coils Coil 672 692 - -
Trre15g05579 831 Gene3D Tetratricopeptide repeat domain 92 221 IPR011990 GO:0005515
Trre15g05579 831 PANTHER PROTEIN CLMP1 55 818 IPR044517 -
Trre15g05579 831 SUPERFAMILY TPR-like 92 226 IPR011990 GO:0005515
Trre15g05579 831 MobiDBLite consensus disorder prediction 477 501 - -
Trre15g05579 831 MobiDBLite consensus disorder prediction 264 292 - -
Trre15g05579 831 ProSiteProfiles PB1 domain profile. 333 425 IPR000270 GO:0005515
Trre15g05579 831 MobiDBLite consensus disorder prediction 428 501 - -
Trre15g05579 831 ProSiteProfiles TPR repeat profile. 95 128 IPR019734 GO:0005515
Trre15g05579 831 SMART PB1_new 333 425 IPR000270 GO:0005515
Trre15g05579 831 CDD PB1 336 422 - -
Trre15g05579 831 SMART tpr_5 169 202 IPR019734 GO:0005515
Trre15g05579 831 SMART tpr_5 95 128 IPR019734 GO:0005515
Trre15g05579 831 SMART tpr_5 133 168 IPR019734 GO:0005515
Trre15g05579 831 Gene3D - 335 403 - -
Trre15g05579 831 MobiDBLite consensus disorder prediction 692 738 - -
Trre15g05579 831 SUPERFAMILY CAD & PB1 domains 332 397 - -
Trre15g05579 831 SUPERFAMILY TPR-like 552 648 IPR011990 GO:0005515
Trre15g05579 831 Pfam PB1 domain 335 424 IPR000270 GO:0005515
Trre15g05579 831 MobiDBLite consensus disorder prediction 802 817 - -
Trre15g05579 831 MobiDBLite consensus disorder prediction 692 718 - -
Trre15g05579 831 MobiDBLite consensus disorder prediction 254 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05579 Trre-Chr15 64252014 64260244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05579 95 213 Calmodulin-binding Proteins AT3G25230 30.000 1.11e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05579 K26538 - gmx:100786963 1166.37